Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1799g00017 ATGGCTCAGCAAAACAATGCCGACAACAACGTTGTGACCCAGGAACAACATCAACAGCTTGTGAACCCCGTGTTCCATGACTTTCTTGGCACTAAGAGCACCAACCCCATTCACTCCAATGTGCTCTATGCCCCCCAAACCTCTCATCTTTACGTCACCCGCTCCTCCCTATCTTCCGCCACCGTGTTCAGCGGCGCTGCCACCTCCCACCTCGCTTCCGAAAAACAGATTGGGAATCATCTTGAGGGAGTTCCATTCTATGGTCCGAAGAGTGAATTTTGTGGCATTGAGATAGCTAACAGAGTAGTGAGAAAGAAGAGAAGTAATTCTGATACCACTTTTATCTTTTCTTCCAGAGATTCCTTCCAAATGGTCCCTCATTCCCTTCAAAACTCACATTCCATGAAGATGCTTCGGAATGCAGCTACTTCTGATTGCCTTAGAAGGTCTAATGGTGATGATGTGTTTCTTCCTATGCAGTCACTGAAGCCAACAACCAGTGGCTCTCAGATATTGCAGACTCCCACTGGAACTAAGTCTGATGCAAATAAATTGGAAAGATCAATTCTCATGAATTTTGGTCCTTTCATGCAGTTAGCTCCTCTTATGGACCAAAGAACTTCAAACAAGATGGGTGATACTAGTGCTGCTCCTTCATTTATCTCTCAGTTAGCTGCTGATGAAGGGTCTAGAACCAGAATCAAGGGTCCTGGGCTTTTCAGTTCCATTAACACAATCAATGCAGTCACTGATAAGACTTCTTCCATGCTTGGTGGCAGCAGAGCAAAGCCTGTGACAAACATAGTAGACCCTGAATCTTCCACAATTCTGAATCAACGTGGCTCATCATCTGCCACCTGTCAGATGACTATCTTTTATGGAGGTCAAGCTCATGTGTTTGATGATGTACAGCCTAATAAGGCTGATGTTATAATGGCTTTAGCTGGCTCTAATGGTGGATCTTGGACCACAGCATTCTCGTCCAAATCTTCTGTAAAGCTACACCATGATAGTAACTTGGAAAGAAATTCAAGTCATCATGCCACTGAACCAGGTGGTCAACTGACTTCCACAACAGCTGAAGATACAAGAAAATCTGGTTCAAGCTGCAAATCCTAG 1119 0.445 MAQQNNADNNVVTQEQHQQLVNPVFHDFLGTKSTNPIHSNVLYAPQTSHLYVTRSSLSSATVFSGAATSHLASEKQIGNHLEGVPFYGPKSEFCGIEIANRVVRKKRSNSDTTFIFSSRDSFQMVPHSLQNSHSMKMLRNAATSDCLRRSNGDDVFLPMQSLKPTTSGSQILQTPTGTKSDANKLERSILMNFGPFMQLAPLMDQRTSNKMGDTSAAPSFISQLAADEGSRTRIKGPGLFSSINTINAVTDKTSSMLGGSRAKPVTNIVDPESSTILNQRGSSSATCQMTIFYGGQAHVFDDVQPNKADVIMALAGSNGGSWTTAFSSKSSVKLHHDSNLERNSSHHATEPGGQLTSTTAEDTRKSGSSCKS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1799g00017 372 MobiDBLite consensus disorder prediction 345 372 - -
Vium1799g00017 372 Pfam tify domain 284 316 IPR010399 -
Vium1799g00017 372 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 198 349 IPR040390 -
Vium1799g00017 372 MobiDBLite consensus disorder prediction 333 372 - -
Vium1799g00017 372 ProSiteProfiles Tify domain profile. 282 317 IPR010399 -
Vium1799g00017 372 SMART tify_2 282 317 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1799g00017 Vium-Chr1799 101058 105064 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1799g00017 24 315 Tify Gene Family AT4G32570 33.003 2.42e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vium1799g00017 tify 4.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1799g00017 - - ahf:112707837 353.599