Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1799g00013 ATGGATAGAGAGAATGCTGTAATCGGTGTGAGAGACAGTGTTCGAGTGACGCGAGCAATGGCGAGAGCTTTGAGAGAGGTCTCTGCCTCTTCAAGACCATGCTTTAAGAAACAGCGAAGGGTGGAAAAGAGCAGCAGAGCAGCGCTGACAGATGTAACCAATGAATACAGAAAACCGCAGCTCAATAAGTGCGCTGTGCCCAGTTTTCAGACAAGAGGAGGTTATAAGAAGCGAAACACAATGGGAACTTCCAATGTCTCCATACAAGTTTGGTCAACTCAAGATGTTAGAGCAAAGTCAGCAAAAGATTTATCAGCAATATCGATGGTACAGTCACATGAACCTGTTGGTGCTGAAAGGCTGGAAGACAGAGAGCTAGTGCCACCTTCTATGTCTGTCATAGATGGTCCCCAGCTTACAATGCGGGACTCTATGCAGTCTGATGAACTCCTTAGCTCTCCGAACAAAGATATTGATATGATTTCAGAGAAACTAAAGCATTCGGATGGTTTGGGCATTGTGGACATTGATTCAGTTGAGTTAAAGGATCCTCAAGTTTGGAGTTCATATGCCCCTGATATATACAATAATATATGTGTCAGAGAGTTTGAAAGGAGACTAACCAATTACATGGGCGAGCTGCAGAAAGACATCACTCCAAGCATGCGCGCAATTCTGATTGATTGGCTTGTGGAGGTTTCTGAGGAATATAAGCTAGTTCCAGATACTCTTTACCTTACTGTGAATCTCATTGATCGGTTTCTTTCTCAAAGTTTGATTGAGAAACAAGGACTACAGTTGCTGGGTGTTACTTGCATGCTGATTGCATCAAAGTATGAAGAGATTTGTGCTCCTCGAGTGGAAGAATTTTGCTTCATCACAGATAATACGTACTCAAAAGCAGAGGTATTGAAAATGGAGAGTGAGGTTCTAAATCTGTTGCATTTTCAATTATCTGTTCCCACCACTAAAACATTTCTCAGGAGGTTCATCCTAGCAGCACAATATTCTTTTAAGGTTTCTTACGTTGAAGTGGAATTTCTGGCAAATTATTTAGCAGAACTCACTCTTGTTGAATACAGCTTCTCGCAGTTCCGACCATCCATGATAGCTGCGTCTGCTGTTTTACTAGCCAGATGGACCCTCAACCAGTCAGAATATCCATGGAATTCAACCATGGAACACTATACGAATTACAAAGTGTCAGAACTTAAAACTACTGTCCTTGCACTGGCAGATTTGCAACTTAATACCAAAGGCTGTCCTCTGAATGCTATACGTGAAAAATATAAACAGCAGAAGTTCATGAATGTGGCAAATTTGTCTCCAAAACCAGTGCAGACACTTTTTGAGACTAAGTATAAAGTTGTAAATGATGGCATCTCCGAAGACTAA 1395 0.4158 MDRENAVIGVRDSVRVTRAMARALREVSASSRPCFKKQRRVEKSSRAALTDVTNEYRKPQLNKCAVPSFQTRGGYKKRNTMGTSNVSIQVWSTQDVRAKSAKDLSAISMVQSHEPVGAERLEDRELVPPSMSVIDGPQLTMRDSMQSDELLSSPNKDIDMISEKLKHSDGLGIVDIDSVELKDPQVWSSYAPDIYNNICVREFERRLTNYMGELQKDITPSMRAILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQSLIEKQGLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYSKAEVLKMESEVLNLLHFQLSVPTTKTFLRRFILAAQYSFKVSYVEVEFLANYLAELTLVEYSFSQFRPSMIAASAVLLARWTLNQSEYPWNSTMEHYTNYKVSELKTTVLALADLQLNTKGCPLNAIREKYKQQKFMNVANLSPKPVQTLFETKYKVVNDGISED 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1799g00013 464 FunFam Mitotic cyclin 6 207 306 - -
Vium1799g00013 464 Pfam Cyclin, N-terminal domain 193 319 IPR006671 -
Vium1799g00013 464 PIRSF Cyclin_A_B_D_E 9 456 IPR046965 GO:0016538|GO:0044772
Vium1799g00013 464 Pfam Cyclin, C-terminal domain 321 443 IPR004367 -
Vium1799g00013 464 CDD CYCLIN_AtCycA-like_rpt2 321 435 - -
Vium1799g00013 464 FunFam Cyclin A1 308 440 - -
Vium1799g00013 464 Gene3D - 207 319 - -
Vium1799g00013 464 PANTHER CYCLINS 154 432 IPR039361 -
Vium1799g00013 464 SUPERFAMILY Cyclin-like 182 318 IPR036915 -
Vium1799g00013 464 SMART cyclin_7 228 312 IPR013763 -
Vium1799g00013 464 SMART cyclin_7 325 413 IPR013763 -
Vium1799g00013 464 SUPERFAMILY Cyclin-like 320 443 IPR036915 -
Vium1799g00013 464 ProSitePatterns Cyclins signature. 223 254 IPR006671 -
Vium1799g00013 464 Gene3D - 193 440 - -
Vium1799g00013 464 SMART Cyclin_C_2 321 444 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1799g00013 Vium-Chr1799 58944 65377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1799g00013 10 450 Core Cell Cycle Gene Families AT5G25380 52.851 2.50e-139 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1799g00013 K06627 - gmx:100777132 679.863