Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1799g00008 ATGGAGCGGCCTGGAAGCTTAAATGGCAGTCAGCATGTGATAGAAATAGGTGGGAGTTCCGATGCTTCTACTTCAACTGCGACACATCATGATAGCAATTTTAATGGCACACATGTTACGCTACACGAAGAAAGAGTTACCGGTGCAAGGTCGCCTCTATCTCAGCCTTCAGTTTCAGTCACTAGTTTATCAAATGGGTCTAATAGTCGGAATTCCTCGTTCATGAGACGCGGGGATACGCGTAGGAATAGGAGTCCGGTGCATTCGGGGTTGTGGATATCGATTGAGCTGGTCCTCTTAGTGAGCCAGATTGTTGCATCTATCGTTGTTTTATCTTTGTCAAGGCATGAACATCCTCGTACTCCATTGTTTCAATGGATCATTGGTTATGCTTCCGGATGTGTTGCTACCCTCCCTCTGCTTTATTGGCGGTATTATCATCATAACCATGCGAGAGAGCAAGATTCATCTCAATCAAGGCAAACATCTCCTCGGATTAATGATCCTTCAGGGACACTCCTTTTCAGTTCCAGAACTAGTGGTGGAGAAGATGGTCAGGCTGTTGCATCCTCCAGAAGCAATCAAGCCTCTGTGTTGATGAATAGAAGAATGAAGACTCTAGTGGAATATTTCAAAATATCTTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCGTCTGCTGATGAAGCTCCTAACTTGTACAGGTTATGTATAGTGTTTCTTGCATTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTGCCATGTATAATTTCCATCCTCGGGGTTAGAGAGGACATGTCTCAAAACAGAGGGGCAACTTCTGAATCTATTAATGCTTTGCCAACTTACAAGTTCAAGATGAAGAAAAATAAAAGAAATGGAGAAGGCAACTCAACTGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAAGAGCGAGTAATATCTGGAGAAGATGCAGTATGCTGCATCTGTCTGGCAAAGTATGAAAATAACGATGAGTTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGATTGTGTGGATAAATGGTTGAAAATAAATTCATTATGTCCTCTTTGCAAGAATGATGTTGGTGAGAACTTAACAGGATTGGTCTCAAGTGAAGATGCCAACCAACATCGGAATGAGAGCAGGATTGAGAATGGCCTTGCGAATACATCACTTTAG 1248 0.4223 MERPGSLNGSQHVIEIGGSSDASTSTATHHDSNFNGTHVTLHEERVTGARSPLSQPSVSVTSLSNGSNSRNSSFMRRGDTRRNRSPVHSGLWISIELVLLVSQIVASIVVLSLSRHEHPRTPLFQWIIGYASGCVATLPLLYWRYYHHNHAREQDSSQSRQTSPRINDPSGTLLFSSRTSGGEDGQAVASSRSNQASVLMNRRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGHSSADEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMSQNRGATSESINALPTYKFKMKKNKRNGEGNSTEGGVVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINSLCPLCKNDVGENLTGLVSSEDANQHRNESRIENGLANTSL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1799g00008 415 MobiDBLite consensus disorder prediction 50 74 - -
Vium1799g00008 415 SUPERFAMILY RING/U-box 332 387 - -
Vium1799g00008 415 FunFam E3 ubiquitin-protein ligase 323 389 - -
Vium1799g00008 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 387 IPR013083 -
Vium1799g00008 415 SMART ringv_2 339 381 IPR011016 GO:0008270
Vium1799g00008 415 MobiDBLite consensus disorder prediction 12 35 - -
Vium1799g00008 415 MobiDBLite consensus disorder prediction 1 85 - -
Vium1799g00008 415 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 384 - -
Vium1799g00008 415 ProSiteProfiles Zinc finger RING-type profile. 340 381 IPR001841 -
Vium1799g00008 415 Pfam Ring finger domain 340 381 IPR001841 -
Vium1799g00008 415 MobiDBLite consensus disorder prediction 395 415 - -
Vium1799g00008 415 SMART ring_2 340 380 IPR001841 -
Vium1799g00008 415 CDD RING-H2_EL5-like 340 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1799g00008 Vium-Chr1799 39034 47008 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1799g00008 76 387 C3H Transcription Factor Family AT1G80400 59.748 1.11e-141 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1799g00008 - - gmx:100778728 734.947