Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1798g00002 ATGGAAGCCACTTCCATAACTTCGTTGTTGAAGGGCTTTTGTGATCACACACGATGGAAATATGCTGTTTTTTGGAAGCTTAACCACCATTTTCCTATGAATTTGACCTGGGAAAATGGTTACCAGAAAGGAAATGAGGTTGAGGAAAGTATGTGGGATGAGGTCAATTTCAAATCCCCAGATGAGTTATATTCTTCAAGAGGTGAAAGTACTGATTATTCAGGAGATTATTCAGTTCGACTTCTCATGATTGAAATGTCCCATCGTAAATACAATTTGGGAGAAGGGGTTGTTGGTAAAGTAGCTCTTGCCAGGGATCATTGTTGGGTTTCCTGTGAGGATATTCTTACCCCTAAATTTGAAACTGATTTAATCACAGAGTGTCCTGATGAGTGGCTTCTTCAGATTGCATGTGGCATCAAGACTATTGTGTTTGTACCGGTTCTTCCTCTAGGGGTTTTGCAGTTTGGTTCATTTGAAGAGGTTGCTGAAGACCTGGAATTCGTTACCACTGTGAAGGGTAAGCTCCAATCCATTGATAGCATGGAAGCAAACATTACCCCTTTGAGCATGGGAACTGATTATCAAGATTGGTCGGACCTAATGCATAATTTGATGAATAGCTTGGACGAATCATCTTCTGTTACTAAAACCATATGGAAAAGTGAAGTTTCAACCAGTACTGCTTCGAACAGTGCAAATGGTTCAACAAGGCTGAACCCAACAATGCTATCATTTATTCAAGATGACTGTTCTGTGTCAAGACAAAATCTACTAAAATCTCTGAAAAGAGAAAATGTCAATGAGATAGGTTCTTCTTCATTTGATATGTCAACTGTTCCTAGACATATTAGTAAGATGGAGACAAAACCAAATCACATGGAAGCAGAGACGTGGTCCTGGTCAGTTTTTGAAGAGATGTCAAACGGATTAGACTCTTTGTCTGTTAAAAATATGACAGAGAAACAGTTTGGAGGCACTGAAAGTGGTTATTATGATGCTAAGAATATCAATGACTTCACTTTTCCCTCAGAGTCAGAATTGCACAAAGCACTTGGATCAGTTGCATACTCTGTTGGTGAAGCATACCGTACCTCATGTCTGATAACCAATAAAAAAGAGAGTGATCATTTTAAAGGTTTTGAGTTTCCCGAAGATCTTGATCCTGAATATCTTTTAGATGCTGTTGTTGGCAATTTATGTAGTGCTGCAGATGATACTTCTAGTATTTCAAACAGTATCAGATCTTTTACGACTTTGCCAACAGAGATTAGTGGTTCCATTCCAAATAATTATTCAGAAGAAAGCTACACTTTGATTGTGGATAATTCGGATGTGAAGAATGATCTTGTGCCTACAGTTTCCTTCAAGAGAAAATATGAATTTTCTAACCATTTTACATCATCTTTTGATGGAAATGGAAGCTTATTGATTGATGAGGTGCCACAGGAAAAGGAAGATGGTCATATGCTTCCTATCAGTGGACCAAAGCTCTCTAGCACAAACAAGAAAAGAACAAGAGTTGCTAACAACCAAAAGGCAAGGCCAAGAGACAGACAGCTTATCATGGACAGAATGAAGGAGTTGAGAGAACTTGTCCCAGATGGTGGAAGGTGTAGCATTGACAACCTCTTGGAACGGACCATAAAGCACATGCTCTACTTGAGAAAAATAACAAGTCAGGCCGAGAAACTAAAACGATTTGCCAATCGGACGGTTGGTGAGAGCAAAAGACAGAAAATGAACGGTAGCCACCCAGGAAGGAGCTGTGCATTTGACTTTGAAAGTGAACTAGCATGGCCTATAGTCATAGAAGATCTGGAATGCACAGGGCACATGCTCATTGAGATGATATGCAATGAGCATGGCCTTTTCTTGGAGATTGCTCAGGTGATCCGAAAGCTGGATGTCACCATCTTGAAAGGGATCTTGGAAAACCGTTCTAGCGACAGCTGGGCTTGTTTCATTGTTGAGGTTCCTAGAGGTTTTCACAGAATGGATGTTCTATGTCCATTACTGCATCTTCTGCAGCTGAGGAGAAACCCTATCTCATACAAAAGCTGA 2064 0.4007 MEATSITSLLKGFCDHTRWKYAVFWKLNHHFPMNLTWENGYQKGNEVEESMWDEVNFKSPDELYSSRGESTDYSGDYSVRLLMIEMSHRKYNLGEGVVGKVALARDHCWVSCEDILTPKFETDLITECPDEWLLQIACGIKTIVFVPVLPLGVLQFGSFEEVAEDLEFVTTVKGKLQSIDSMEANITPLSMGTDYQDWSDLMHNLMNSLDESSSVTKTIWKSEVSTSTASNSANGSTRLNPTMLSFIQDDCSVSRQNLLKSLKRENVNEIGSSSFDMSTVPRHISKMETKPNHMEAETWSWSVFEEMSNGLDSLSVKNMTEKQFGGTESGYYDAKNINDFTFPSESELHKALGSVAYSVGEAYRTSCLITNKKESDHFKGFEFPEDLDPEYLLDAVVGNLCSAADDTSSISNSIRSFTTLPTEISGSIPNNYSEESYTLIVDNSDVKNDLVPTVSFKRKYEFSNHFTSSFDGNGSLLIDEVPQEKEDGHMLPISGPKLSSTNKKRTRVANNQKARPRDRQLIMDRMKELRELVPDGGRCSIDNLLERTIKHMLYLRKITSQAEKLKRFANRTVGESKRQKMNGSHPGRSCAFDFESELAWPIVIEDLECTGHMLIEMICNEHGLFLEIAQVIRKLDVTILKGILENRSSDSWACFIVEVPRGFHRMDVLCPLLHLLQLRRNPISYKS 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1798g00002 687 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 173 IPR025610 -
Vium1798g00002 687 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 506 555 IPR011598 GO:0046983
Vium1798g00002 687 MobiDBLite consensus disorder prediction 487 515 - -
Vium1798g00002 687 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 335 682 IPR043561 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1798g00002 Vium-Chr1798 29486 35592 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1798g00002 320 681 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 35.233 5.81e-50 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1798g00002 - - gmx:100820605 1039.25