Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1798g00001 ATGGAAGCCACTTCCATAACTTCGTTGTTGAAGGGCTTTTGTGATCACACACGATGGAAATATGCTGTTTTTTGGAAGCTTAACCACCATTTTCCTATGGTTGTTGGTAAAGTAGCTCTTGCCAGGGATCATTGTTGGGTTTCCTGTGAGGATATTCTTACCCCTAAATTTGAAACTGATTTAATCACAGAGTGTCCTGATGAGTGGCTTCTTCAGATTGCATGTGGCATCAAGACTATTGTGTTTGTACCGGTTCTTCCTCTAGGGGTTTTGCAGTTTGGTTCATTTGAAGAGGTTGCTGAAGACCTGGAATTCGTTACCACTGTGAAGGGTAAGCTCCAATCCATTGATAGCATGGAAGCAAACATTACCCCTTTGAGCATGGGAACTGATTATCAAGATTGGTCGGACCTAATGCATAATTTGATGAATAGCTTGGACGAATCATCTTCTGTTACTAAAACCATATGGAAAAGTGAAGTTTCAACCAGTACTGCTTCGAACAGTGCAAATGGTTCAACAAGGCTGAACCCAACAATGCTATCATTTATTCAAGATGACTGTTCTGTGTCAAGACAAAATCTACTAAAATCTCTGAAAAGAGAAAATGTCAATGAGATAGGTTCTTCTTCATTTGATATGTCAACTGTTCCTAGACATATTAGTAAGATGGAGACAAAACCAAATCACATGGAAGCAGAGACGTGGTCCTGGTCAGTTTTTGAAGAGATGTCAAACGGATTAGACTCTTTGTCTGTTAAAAATATGACAGAGAAACAGTTTGGAGGCACTGAAAGTGGTTATTATGATGCTAAGAATATCAATGACTTCACTTTTCCCTCAGAGTCAGAATTGCACAAAGCACTTGGATCAGTTGCATACTCTGTTGGTGAAGCATACCGTACCTCATGTCTGATAACCAATAAAAAAGAGAGTGATCATTTTAAAGGTTTTGAGTTTCCCGAAGATCTTGATCCTGAATATCTTTTAGATGCTGTTGTTGGCAATTTATGTAGTGCTGCAGATGATACTTCTAGTATTTCAAACAGTATCAGATCTTTTACGACTTTGCCAACAGAGATTAGTGGTTCCATTCCAAATAATTATTCAGAAGAAAGCTACACTTTGATTGTGGATAATTCGGATGTGAAGAATGATCTTGTGCCTACAGTTTCCTTCAAGAGAAAATATGAATTTTCTAACCATTTTACATCATCTTTTGATGGAAATGGAAGCTTATTGATTGATGAGGTGCCACAGGAAAAGGAAGATGGTCATATGCTTCCTATCAGTGGACCAAAGCTCTCTAGCACAAACAAGAAAAGAACAAGAGTTGCTAACAACCAAAAGGCAAGGCCAAGAGACAGACAGCTTATCATGGACAGAATGAAGGAGTTGAGAGAACTTGTCCCAGATGGTGGAAGGTGTAGCATTGACAACCTCTTGGAACGGACCATAAAGCACATGCTCTACTTGAGAAAAATAACAAGTCAGGCCGAGAAACTAAAACGATTTGCCAATCGGACGGTTGGTGAGAGCAAAAGACAGAAAATGAACGGTAGCCACCCAGGAAGGAGCTGTGCATTTGACTTTGAAAGTGAACTAGCATGGCCTATAGTCATAGAAGATCTGGAATGCACAGGGCACATGCTCATTGAGATGATATGCAATGAGCATGGCCTTTTCTTGGAGATTGCTCAGGTGATCCGAAAGCTGGATGTCACCATCTTGAAAGGGATCTTGGAAAACCGTTCTAGCGACAGCTGGGCTTGTTTCATTGTTGAGGTTCCTAGAGGTTTTCACAGAATGGATGTTCTATGTCCATTACTGCATCTTCTGCAGCTGAGGAGAAACCCTATCTCATACAAAAGCTGA 1875 0.4027 MEATSITSLLKGFCDHTRWKYAVFWKLNHHFPMVVGKVALARDHCWVSCEDILTPKFETDLITECPDEWLLQIACGIKTIVFVPVLPLGVLQFGSFEEVAEDLEFVTTVKGKLQSIDSMEANITPLSMGTDYQDWSDLMHNLMNSLDESSSVTKTIWKSEVSTSTASNSANGSTRLNPTMLSFIQDDCSVSRQNLLKSLKRENVNEIGSSSFDMSTVPRHISKMETKPNHMEAETWSWSVFEEMSNGLDSLSVKNMTEKQFGGTESGYYDAKNINDFTFPSESELHKALGSVAYSVGEAYRTSCLITNKKESDHFKGFEFPEDLDPEYLLDAVVGNLCSAADDTSSISNSIRSFTTLPTEISGSIPNNYSEESYTLIVDNSDVKNDLVPTVSFKRKYEFSNHFTSSFDGNGSLLIDEVPQEKEDGHMLPISGPKLSSTNKKRTRVANNQKARPRDRQLIMDRMKELRELVPDGGRCSIDNLLERTIKHMLYLRKITSQAEKLKRFANRTVGESKRQKMNGSHPGRSCAFDFESELAWPIVIEDLECTGHMLIEMICNEHGLFLEIAQVIRKLDVTILKGILENRSSDSWACFIVEVPRGFHRMDVLCPLLHLLQLRRNPISYKS 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1798g00001 624 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 34 110 IPR025610 -
Vium1798g00001 624 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 262 619 IPR043561 GO:0003700|GO:0006355
Vium1798g00001 624 MobiDBLite consensus disorder prediction 424 452 - -
Vium1798g00001 624 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 443 492 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1798g00001 Vium-Chr1798 29485 35592 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1798g00001 257 618 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 35.233 3.85e-50 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1798g00001 - - gmx:100820605 887.1