Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1797g00001 ATGGGAATAGAGATTCTGGAGCCTAACACATGCATCAGGGGTTGCTGCACCAGCCCCTCTATTCCCCTTCATCTTCCTCCAGCTTCTTATACTGTCCTCTCTCCTATTGCTCGAGGGGCTGAGAGTGTTGTTTATGAAGGGACTTTGGATGGCATTAGGGTTGCTGTGAAGAAACCCATCTTGTCAACTTCAGAAGACATTAATAAGTTTCACAAAGAATTGCAATTGCTGTGCAAGTTAGATCACCCGGGAATTGCGACATTGATTGCGGCCCATGCAAAACCACCCAATTACATGTTTTTCTTCAAGTTATATGAATCTCGGAATCTTGCACAGAAGTTGCATGTAGAAGAGTGGATACCAACTCTTAATGATGCAGTAATGATGGCAATGCAATTAGCAAAGGCTTTGCAATATCTGCATAACCTCGGGATTGTGCATAGAGATGTGAAACCGGCAAATATTCTTCTTGACGAAAGTCTTTGTCCATACCTCACAGATTTTGGTTTGGCAGAATACAAGAATGATCTTAAGGGAGTTTCTATTCAGAATTGGAAGTCTTCTGGAAAGCCTACTGGTGGTTTCCACAAAAAGAATATGGTTGGAACGGTCATTTACATGGCACCTGAAATATTAAGAAAGGAGTTACATACAGAAAAATCTGATGTATACAGTTTTGGGATATCAATCAATGAACTCCTTACTGGTGTTGTGCCATATACAGATCTTCGTACAGAAGCTCAAGTAAGTCTATCTATCTTATGTGCAGTTTGA 774 0.4083 MGIEILEPNTCIRGCCTSPSIPLHLPPASYTVLSPIARGAESVVYEGTLDGIRVAVKKPILSTSEDINKFHKELQLLCKLDHPGIATLIAAHAKPPNYMFFFKLYESRNLAQKLHVEEWIPTLNDAVMMAMQLAKALQYLHNLGIVHRDVKPANILLDESLCPYLTDFGLAEYKNDLKGVSIQNWKSSGKPTGGFHKKNMVGTVIYMAPEILRKELHTEKSDVYSFGISINELLTGVVPYTDLRTEAQVSLSILCAV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1797g00001 257 ProSiteProfiles Protein kinase domain profile. 30 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1797g00001 257 Gene3D Transferase(Phosphotransferase) domain 1 23 255 - -
Vium1797g00001 257 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Vium1797g00001 257 SUPERFAMILY Protein kinase-like (PK-like) 19 249 IPR011009 -
Vium1797g00001 257 SMART serkin_6 30 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1797g00001 257 Pfam Protein kinase domain 30 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1797g00001 257 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 25 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1797g00001 Vium-Chr1797 7985 11047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1797g00001 99 248 PP2C-type Phosphatase Gene Family AT2G40860 74.000 9.47e-80 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-3 Vium1797g00001 Pkinase 2.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1797g00001 - - vun:114166829 493.426