Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium178g00007 ATGAACAGGCATGGTTCTAANTTATGGTGTCATAAAGATGTTCATGAAGTACTTAAAGAAAACTCAGGAAGTGATACAGTTGAAGGAATAATGCTTTATCCCCCAAAACAAGAAAAAATAGATTATTGGACTATGACAGCCTTCAAGAAGATGAAGAACCTCAGAATTTTGATTGTTCGCAATGCAATATTTTCGTCTGGTCCTAGTTATCTGCCAAATAGTTTACGGCTAATCGATTGGAAGGGGTACCCATCAAAGTCTTTTCCGCCAGAATTTTATCCCCACAGAATTGTTGACTTCAAGTTACCTCATAGTTCTCTGATATTTAAAAAGCCATTTCAGAGATTTGAGGATCTGACATTCATCAATCTTTCCCATTGTCAATTCATAACTCAAATTCCTGACCTGTCTGGAGCTAAAAGCTTGAAGGTATTTACACTTGATAAATGCTATAGACTGACAAGGTTCGATAAATCCATTGGGTTTATGCCTAACCTTGTGTACTTAAGTGCTTCAGAGTGCACTCTGCTCACAAGTTTTGTGCCAACGATGTATTTGCCCTCTCTCGAAGTGCTTTCATTTAACTTTTGCAGAAGACTTGAACACTTCCCTCATGTAATGCAAAAAATGGATAAGCCATTAAAGATATACATGATGAGTACTGCCATTAAAAAGATTCCGGAATCCATTGGTAACCTTACTGGACTTGAGCATATAGACATGTCAGTTTGCAAAGAGCTTAAAAATCTGCCAAGTAGCTTCTTTTTGCTCCCAAAACTTGTCACTTTAAAAGTTGATGAATGCTCTCAACTTGGAGAATCATTTCAAAGGTTCCAAAAGAGCCGCCATTCCGTGGAAAATGGCAGTTCAAATTTAGTGACACTTCATTTTTGTGAGACTAATCCATCATATGAAGATCTTTGTGCCATTCTTGAAACTTTTCCAAAATTAGAAGACTTAAATGTATCACACAACGGATTTGTAGCCCTACCAAACATCATCGGAGGATCTTCTCACTTGAAAAGTTTGGATGTTAGTTTCTGCAGGAATCTTAAGGAAATTCCAGAACTTCCCTTAAGTATTCAGAAAGTAGATGCAAGATACTGTCAGTCCTTGACTTCAGAGGCATCAAGCATGCTATGGTCTAAGGTCTCAGAAGAGATTCAAAGAATACAAGTTGTAATGCCGATGCTGAAAAGAGAAATACCTGAATGGTTTGACTGCATAGGCACTAAAGAGATTCCACATTTCTGGGCTCGCAGAAAGTTTCCTGTTGTTGCTTTAGCATTAGTTTTCCAGGAATCGAAAAAGAAACTGTCTGATTTTGAACATGCTTTCCAGTCAGCTGTAGAATCGTTCACTGGATTTGTGAACTGGCACACTGTAAGCCTCCACTTGTTTATTGACGGACAAGAAATATGTGGTAGAGATTACCACTGTTTCAACGTTGGAGAAGATCATGTGTTATTTTGTGATCTGCGAGTCTTGTTCAGGGATGAAGAGTGGCAGGGCCTTGACGCAAGTCTTGGAGATGATTGGAAGGCCATTCAGGTTCAATACGAATCAGACCTGATTCTGAGTCATTGGGGAGTTAATGTGTACGAGCAAGAAACAAACACGGATGATATCCAATTCAGGTTTCCCACTCCCAGCTCCAGGAGGAACTTAATTCCATCATCACTTTTGGTTCCAAAAGGTTGTCCAAAGCAGAAAATGAAACATATGCTGGAAAGTTTTGATCCACGAGACATGTTTAACAAGAATCTGTCTCTAATAGAGTCAGAAGAAGGTCCAAGCAGGGCTGGAAAAGTACTTTTGAGAACCTGGAGGAATGCTAAGGCTGAGATTACCGAGGAAGCTTCAATTTCAGTCTACGGGGCAAGTTTAAAGCAAGAACACGAAGAATCTGTTGACGATGTGGTACAGGTTTTAGAGATGATAAAGGAGAATGTACCCAAACATTTTTCTGATTCAAATCCTGAAGAAATGCAATCGTTTGGTGGATTTGTAGAAAGATTATTGAGGGCACGGGTAGAAGTAATGAAGGAAAACGGGTTGGACATGGGTATGCCTATTCTTCTAGAGTACACTGACGGAGGAGGATCTAAATATCGACGCTTTTGGGGAGTGTTGCAATTAAAAGTGGGAGATCCATTTTACAAAGCAGTGTTGAGGAAGTATATCCAACTTTCATTGGAATTTTCGGCAAGCAACAAAGCCGCCTCCAGCTCAGGTTCGTGGTTTGAAAACTTGAGGATAACCATTGTTTTATTGAAATGCTTGGATCCAGCCATGGATGAAGCTTTGGGCTTTGGCTACGAGGAATCCTTGGAGGAAGGATACTACGATCCTGAATTGGAAGAATTAATGATGAGGATTGAGCAAGATGGTATGGGGTTTAATAAATCTTACGGCAAAATGAAGGCATCTATTGTTCGAACCGATGAATCGGTTTCTCCAGAGTATTTATTTGAGACATTAATCTTCAGAAGACTAATAGCTTTGGGGAAATTGTCAATGTTTGGATCTGCAACTAAGTTCAAGATAACACCGTATGGGAATATAAGGGTTGAGGACGATGCTTTCCGCATTCCGAAGACGTGCTTCTGGAGTTTGATCTTGGTTCTTCATCTACTTTTCTTCATAATCATATGGTTATTTTGTTTGGTAGGATATGTGGGGCTTTTGATTTGTAGAATACCAGTAATAGGAAAGATATTAGTGTGTGGTTGGTGGCTTGTCATGCAAATTCTTGTATCTTGTAAATACTTGTATCATAGAATGGGTAAGATTATGAAAATAAAGAAGAAGGACTTGTAA 2820 0.3915 MNRHGSXLWCHKDVHEVLKENSGSDTVEGIMLYPPKQEKIDYWTMTAFKKMKNLRILIVRNAIFSSGPSYLPNSLRLIDWKGYPSKSFPPEFYPHRIVDFKLPHSSLIFKKPFQRFEDLTFINLSHCQFITQIPDLSGAKSLKVFTLDKCYRLTRFDKSIGFMPNLVYLSASECTLLTSFVPTMYLPSLEVLSFNFCRRLEHFPHVMQKMDKPLKIYMMSTAIKKIPESIGNLTGLEHIDMSVCKELKNLPSSFFLLPKLVTLKVDECSQLGESFQRFQKSRHSVENGSSNLVTLHFCETNPSYEDLCAILETFPKLEDLNVSHNGFVALPNIIGGSSHLKSLDVSFCRNLKEIPELPLSIQKVDARYCQSLTSEASSMLWSKVSEEIQRIQVVMPMLKREIPEWFDCIGTKEIPHFWARRKFPVVALALVFQESKKKLSDFEHAFQSAVESFTGFVNWHTVSLHLFIDGQEICGRDYHCFNVGEDHVLFCDLRVLFRDEEWQGLDASLGDDWKAIQVQYESDLILSHWGVNVYEQETNTDDIQFRFPTPSSRRNLIPSSLLVPKGCPKQKMKHMLESFDPRDMFNKNLSLIESEEGPSRAGKVLLRTWRNAKAEITEEASISVYGASLKQEHEESVDDVVQVLEMIKENVPKHFSDSNPEEMQSFGGFVERLLRARVEVMKENGLDMGMPILLEYTDGGGSKYRRFWGVLQLKVGDPFYKAVLRKYIQLSLEFSASNKAASSSGSWFENLRITIVLLKCLDPAMDEALGFGYEESLEEGYYDPELEELMMRIEQDGMGFNKSYGKMKASIVRTDESVSPEYLFETLIFRRLIALGKLSMFGSATKFKITPYGNIRVEDDAFRIPKTCFWSLILVLHLLFFIIIWLFCLVGYVGLLICRIPVIGKILVCGWWLVMQILVSCKYLYHRMGKIMKIKKKDL 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium178g00007 939 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 217 371 IPR044974 GO:0006952
Vium178g00007 939 SUPERFAMILY L domain-like 40 378 - -
Vium178g00007 939 Gene3D Ribonuclease Inhibitor 44 215 IPR032675 -
Vium178g00007 939 Gene3D Ribonuclease Inhibitor 216 392 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium178g00007 Vium-Chr178 26063 29615 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium178g00007 6 281 WRKY Transcription Factor Family AT4G12020 33.788 3.19e-30 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium178g00007 - - vum:124827448 1887.46