Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium178g00006 ATGACCCGTCTCTTGCACGAGTTTTCTTCAACGCTGTCATCTGTGCTACTGTCTGATGTTCATCCTCATCAGGTTCAACATACCCGCATAAGTATTGTGTGTCTATGCAGGTATGAAACTGAGGTTATTGAGAAGATTGTGAAAGACACCTCAGCTAAACTGCCTCCCATGCCTTTACAAATCAAGCACCTAGTTGGACTTGATTCTCGTTTCGAACGGGTGAAATCTCTAATAGATGTTGAATCAAATGATGAAGTTTGTATACTGGGGATCTATGGGGTTGGCGGAATTGGCAAAACCACATTTGCTGTGGATCTGTATAACAAGATCAGGCATCATTTTGAAGCTGCAAGTTTTCTGGCTAATGTCAGAGAAAAAACAAATAAAAGCATTAAGGGCCTGGAAGATCTCCAAAGGACACTTTTGTCTGAGATGGGTGAAGAGACAGAAACCATTATTGGCAGTACATTTAAAGGAAGTTCTGAAATAAAGTGCAGGCTTGGACATAAAAGAGTTCTTCTGATTGTGGATGATGTTGATTCTGTAAAACAATTGGAAGCATTAGCTGGAGGATATGATTGGTTTGGTCCTGGTAGCAGGATCATTATAACAACAAGAGATAAAGATGTTCTACATAAGCATGATGTTGAAATTAAAGGATATAAAATGGAGGAGCTAAATTATCAGGAATCCCTTGAACTCTTTTGTTGGTATGCCTTTAATAGGAGCAGAGCTGCAGAAAACTTTGCTAACATCTCTACTAGTGCAGTAAGATATGCAAAGGGTATTCCGTTGGCATTAAGAGTAATAGGCTCCAATTTGAAGGGTAGAGGTCCTGAAGAATGCGAGACTGAATTACAGAAATATAGAAAGGTTCCAGATTCAGAGATTCAAGGTGTACTGGAAATAAGCTACACAAGCCTATCCAACTTGGACCAGAAAATTTTCCTGGACATTGCATGTTTCTTCAAAGGGGAAAGGTGGGATTATGTCAAAAGGATACTAGATGCTTGTGATTTCAACCCGGATATAAAAGTATTTGTTAGTAAATGTCTCATAACTGTTGATGAAAACGGTTGCTTGGAAATGCATGATCTAATACAAGAAATGGGTAGAGAGATTGTTCGGAAGGAATCCCCATCAAACCCTGGTTACCGCAGCAGATTATGGTGTCATAAAGATGTTCATGAAGTACTTAAAGAAAACTCAGGAAGTGATACAGTTGAAGGAATAATGCTTTATCCCCCAAAACAAGAAAAAATAGATTATTGGACTATGACAGCCTTCAAGAAGATGAAGAACCTCAGAATTTTGATTGTTCGCAATGCAATATTTTCGTCTGGTCCTAGTTATCTGCCAAATAGTTTACGGCTAATCGATTGGAAGGGGTACCCATCAAAGTCTTTTCCGCCAGATTTTTATCCCCACAGAATTGTTGACTTCAAGTTACCTCATAGTTCTCTGATATTTAAAAAGCCATTTCAGAGATTTGAGGATCTGACATTCATCAATCTTTCCCATTGTCAATTCATAACTCAAATTCCTGACCTGTCTGGAGCTAAAAGCTTGAAGGTATTTACACTTGATAAATGCTATAGACTGACAAGGTTCGATAAATCCATTGGGTTTATGCCTAACCTTGTGTACTTAAGTGCTTCAGAGTGCACTCTGCTCACAAGTTTTGTGCCAACGATGTATTTGCCCTCTCTCGAAGTGCTTTCATTTAACTTTTGCAGAAGACTTGAACACTTCCCTCATGTAATGCAAAAAATGGATAAGCCATTAAAGATATACATGATGAGTACTGCCATTAAAAAGATTCCGGAATCCATTGGTAACCTTACTGGACTTGAGCATATAGACATGTCAGTTTGCAAAGAGCTTAAAAATCTGCCAAGTAGCTTCTTTTTGCTCCCAAAACTTGTCACTTTAAAAGTTGATGAATGCTCTCAACTTGGAGAATCATTTCAAAGGTTCCAAAAGAGCCGCCATTCCGTGGTAAATGGCAGTTCAAATTTAGTGACACTTCATTTTTGTGAGACTAATCCATCATATGAAGATCTTTGTGCCATTCTTGAAACTTTTCCAAAATTAGAAGACTTAAATGTATCACACAACGGATTTGTAGCCCTACCAAACATCATCGGAGGATCTTCTCACTTGAAAAGTTTGGATGTTAGTTTCTGCAGGAATCTTAAGGAAATTCCAGAACTTCCCTTAAGTATTCAGAAAGTAGATGCAAGATACTGTCAGTCCTTGACTTCAGAGGCATCAAGCATGCTATGGTCTAAGGTCTCAGAAGAGATTCAAAGAATACAAGTTGTAATGCCGATGCTGAAAAGAGAAATACCTGAATGGTTTGACTGCATAGGCACTAAAGAGATTCCACATTTCTGGGCTCGCAGAAAGTTTCCTGTTGTTGCTTTAGCATTAGTTTTCCAGGAATCGAAAAAGAAACTGTCTGATTTTGAACATGCTTTCCAGTCAGCTGTAGAATCGTTCACTGGATTTGTGAACTGGCACACTGTAAGCCTCCACTTGTTTATTGACGGACAAGAAATATGTGGTAGAGATTACCACTGTTTCAACGTTGGAGAAGATCATGTGTTATTTTGTGATCTGCGAGTCTTGTTCAGGGATGAAGAGTGGCAGGGCCTTGACGCAAGTCTTGGAGATGATTGGAAGGCCATTCAGGTTCAATACGAATCAGACCTGATTCTGAGTCATTGGGGAGTTAATGTGTACGAGCAAGAAACAAACACGGATGATATCCAATTCAGGTTTCCCACTCCCAGCTCCAGGAGGAACTTAATTCCATCATCACTTTTGGTTCCAAAAGGTTGTCCAAAGCAGAAAATGAAACATATGCTGGAAAGTTTTGATCCACGAGACATGTTTAACAAGAATCTGTCTCTAATAGAGTCAGAAGAAGGTCCAAGCAGGGCTGGAAAAGTACTTTTGAGAACCTGGAGGAATGCTAAGGCTGAGATTACCGAGGAAGCTTCAATTTCAGTCTACGGGGCAAGTTTAAAGCAAGAACACGAAGAATCTGTTGACGATGTGGTACAGGTTTTAGAGATGATAAAGGAGAATGTACCCAAACATTTTTCTGATTCAAATCCTGAAGAAATGCAATCGTTTGGTGGATTTGTAGAAAGATTATTGAGGGCACGGGTAGAAGTAATGAAGGAAAACGGGTTGGACATGGGTATGCCTATTCTTCTAGAGTACACTGACGGAGGAGGATCTAAATATCGACGCTTTTGGGGAGTGTTGCAATTAAAAGTGGGAGATCCATTTTACAAAGCAGTGTTGAGGAAGTATATCCAACTTTCATTGGAATTTTCGGCAAGCAACAAAGCCGCCTCCAGCTCAGGTTCGTGGTTTGAAAACTTGAGGATAACCATTGTTTTATTGAAATGCTTGGATCCAGCCATGGATGAAGCTTTGGGCTTTGGCTACGAGGAATCCTTGGAGGAAGGATACTACGATCCTGAATTGGAAGAATTAATGATGAGGATTGAGCAAGATGGTATGGGGTTTAATAAATCTTACGGCAAAATGAAGGCATCTATTGTTCGAACCGATGAATCGGTTTCTCCAGAGTATTTATTTGAGACATTAATCTTCAGAAGACTAATAGCTTTGGGGAAATTGTCAATGTTTGGATCTGCAACTAAGTTCAAGATAACACCGTATGGGAATATAAGGGTTGAGGACGATGCTTTCCGCATTCCGAAGACGTGCTTCTGGAGTTTGATCTTGGTTCTTCATCTACTTTTCTTCATAATCATATGGTTATTTTGTTTGGTAGGATATGTGGGGCTTTTGATTTGTAGAATACCAGTAATAGGAAAGATATTAGTGTGTGGTTGGTGGCTTGTCATGCAAATTCTTGTATCTTGTAAATACTTGTATCATAGAATGGGTAAGATTATGAAAATAAAGAAGAAGGACTTGTAA 3963 0.3926 MTRLLHEFSSTLSSVLLSDVHPHQVQHTRISIVCLCRYETEVIEKIVKDTSAKLPPMPLQIKHLVGLDSRFERVKSLIDVESNDEVCILGIYGVGGIGKTTFAVDLYNKIRHHFEAASFLANVREKTNKSIKGLEDLQRTLLSEMGEETETIIGSTFKGSSEIKCRLGHKRVLLIVDDVDSVKQLEALAGGYDWFGPGSRIIITTRDKDVLHKHDVEIKGYKMEELNYQESLELFCWYAFNRSRAAENFANISTSAVRYAKGIPLALRVIGSNLKGRGPEECETELQKYRKVPDSEIQGVLEISYTSLSNLDQKIFLDIACFFKGERWDYVKRILDACDFNPDIKVFVSKCLITVDENGCLEMHDLIQEMGREIVRKESPSNPGYRSRLWCHKDVHEVLKENSGSDTVEGIMLYPPKQEKIDYWTMTAFKKMKNLRILIVRNAIFSSGPSYLPNSLRLIDWKGYPSKSFPPDFYPHRIVDFKLPHSSLIFKKPFQRFEDLTFINLSHCQFITQIPDLSGAKSLKVFTLDKCYRLTRFDKSIGFMPNLVYLSASECTLLTSFVPTMYLPSLEVLSFNFCRRLEHFPHVMQKMDKPLKIYMMSTAIKKIPESIGNLTGLEHIDMSVCKELKNLPSSFFLLPKLVTLKVDECSQLGESFQRFQKSRHSVVNGSSNLVTLHFCETNPSYEDLCAILETFPKLEDLNVSHNGFVALPNIIGGSSHLKSLDVSFCRNLKEIPELPLSIQKVDARYCQSLTSEASSMLWSKVSEEIQRIQVVMPMLKREIPEWFDCIGTKEIPHFWARRKFPVVALALVFQESKKKLSDFEHAFQSAVESFTGFVNWHTVSLHLFIDGQEICGRDYHCFNVGEDHVLFCDLRVLFRDEEWQGLDASLGDDWKAIQVQYESDLILSHWGVNVYEQETNTDDIQFRFPTPSSRRNLIPSSLLVPKGCPKQKMKHMLESFDPRDMFNKNLSLIESEEGPSRAGKVLLRTWRNAKAEITEEASISVYGASLKQEHEESVDDVVQVLEMIKENVPKHFSDSNPEEMQSFGGFVERLLRARVEVMKENGLDMGMPILLEYTDGGGSKYRRFWGVLQLKVGDPFYKAVLRKYIQLSLEFSASNKAASSSGSWFENLRITIVLLKCLDPAMDEALGFGYEESLEEGYYDPELEELMMRIEQDGMGFNKSYGKMKASIVRTDESVSPEYLFETLIFRRLIALGKLSMFGSATKFKITPYGNIRVEDDAFRIPKTCFWSLILVLHLLFFIIIWLFCLVGYVGLLICRIPVIGKILVCGWWLVMQILVSCKYLYHRMGKIMKIKKKDL 1320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium178g00006 1320 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 639 IPR044974 GO:0006952
Vium178g00006 1320 PRINTS Disease resistance protein signature 166 180 - -
Vium178g00006 1320 PRINTS Disease resistance protein signature 88 103 - -
Vium178g00006 1320 PRINTS Disease resistance protein signature 260 274 - -
Vium178g00006 1320 PRINTS Disease resistance protein signature 612 628 - -
Vium178g00006 1320 Gene3D Ribonuclease Inhibitor 598 777 IPR032675 -
Vium178g00006 1320 Gene3D Ribonuclease Inhibitor 425 597 IPR032675 -
Vium178g00006 1320 Gene3D - 43 219 IPR027417 -
Vium178g00006 1320 SUPERFAMILY L domain-like 377 759 - -
Vium178g00006 1320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 319 IPR027417 -
Vium178g00006 1320 Pfam NB-ARC domain 71 290 IPR002182 GO:0043531
Vium178g00006 1320 Gene3D - 225 309 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium178g00006 Vium-Chr178 19065 24464 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium178g00006 37 662 WRKY Transcription Factor Family AT4G12020 32.713 1.46e-78 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium178g00006 - - vum:124827448 1872.06