Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium178g00005 ATGGCGAATCACGGTGATTTCACGTATGATGTTTTTATGAGTTTCAAGGGCGAAAACGGGACTCGCTACTCATTCACCGATCATCTCTACCGAGCTTTGCTCCGTCACGGAATCAACGCCTTCAGAGACGAACAGAGTCTCCGAAGCGGGGACGAAATCCGTCCTTCTCTGTTTCAGGCAATCGAAGCTTCCAGAATCTCTTTGGTCGTGCTCTGTCAAAACTATGCATCTTCCTCTTGGTGCCTTGACGAACTGGCCAAGATCCTTCACTGTTACGAAAACAAAGGAAAGCATGTCGTTGCAATTTTTTATTTGGTGGAACCTTCCGATGTACGGTACCAGAAAAACAGTTACGCAACTGCCATGAGTAAACATGAAAACAGATATGGAAAAGACTCGAAGAAGGTTAAAGCATGGCGATCAGCTTTGTCCAGAGTTTGCGACCTAACCGGAATACACTACAGGAACCATATGTATGAAACTGAGGTTATTGAGAAGATTGTGAAAGACACCTCAGCTAAACTGCCTCCCATGCCTTTACAAATCAAGCACCTAGTTGGACTTGATTCTCGTTTCGAACGGGTGAAATCTCTAATAGATGTTGAATCAAATGATGAAGTTTGTATACTGGGGATCTATGGGGTTGGCGGAATTGGCAAAACCACATTTGCTGTGGATCTGTATAACAAGATCAGGCATCATTTTGAAGCTGCAAGTTTTCTGGCTAATGTCAGAGAAAAAACAAATAAAAGCATTAAGGGCCTGGAAGATCTCCAAAGGACACTTTTGTCTGAGATGGGTGAAGAGACAGAAACCATTATTGGCAGTACATTTAAAGGAAGTTCTGAAATAAAGTGCAGGCTTGGACATAAAAGAGTTCTTCTGATTGTGGATGATGTTGATTCTGTAAAACAATTGGAAGCATTAGCTGGAGGATATGATTGGTTTGGTCCTGGTAGCAGGATCATTATAACAACAAGAGATAAAGATGTTCTACATAAGCATGATGTTGAAATTAAAGGATATAAAATGGAGGAGCTAAATTATCAGGAATCCCTTGAGCTCTTTTGTTGGTATGCCTTTAATAGGAGCAGAGCTGCAGAAAACTTTGCTAACATCTCTACTAGTGCAGTAAGATATGCAAAGGGTATTCCGTTGGCATTAAGAGTAATAGGCTCCAATTTGAAGGGTAGAGGTCCTGAAGAATGCGAGACTGAATTACAGAAATATAGAAAGGTTCCAGATTCAGAGATTCAAGGTGTACTGGAAATAAGCTACACAAGCCTATCCAACTTGGACCAGAAAATTTTCCTGGACATTGCATGTTTCTTCAAAGGGGAAAGGTGGGATTATGTCAAAAGGATACTAGATGCTTGTGATTTCAACCCGGATATAAAAGTATTTGTTAGTAAATGTCTCATAACTGTTGATGAAAACGGTTGCTTGGAAATGCATGATCTAATACAAGATATGGGTAGAGAGATTGTTCGGAAGGAATCCCCATCAAACCCTGGTTACCGCAGCAGATTATGGTGTCATAAAGATGTTCATGAAGTACTTAAAGAAAACTCAGGAAGTGATACAGTTGAAGGAATAATGCTTTATCCCCCAAAACAAGAAAAAATAGATTATTGGACTATGACAGCCTTCAAGAAGATGAAGAACCTCAGAATTTTGATTGTTCGCAATGCAATATTTTCGTCTGGTCCTAGTTATCTGCCAAATAGTTTACGGCTAATCGATTGGAAGGGGTACCCATCAAAGTCTTTTCCGCCAGATTTTTATCCCCACAGAATTGTTGACTTCAAGTTACCTCATAGTTCTCTGATATTTAAAAAGCCATTTCAGAGATTTGAGGATCTGACATTCATCAATCTTTCCCATTGTCAATTCATAACTCAAATTCCTGACCTGTCTGGAGCTAAAAGCTTGAAGGTATTTACACTTGATAAATGCTATAGACTGACAAGGTTCGATAAATCCATTGGGTTTATGCCTAACCTTGTGTACTTAAGTGCTTCAGAGTGCACTCTGCTCACAAGTTTTGTGCCAACGATGTATTTGCCCTCTCTCGAAGTGCTTTCATTTAACTTTTGCAGAAGACTTGAACACTTCCCTCATGTAATGCAAAAAATGGATAAGCCATTAAAGATATACATGATGAGTACTGCCATTAAAAAGATTCCGGAATCCATTGGTAACCTTACTGGACTTGAGCATATAGACATGTCAGTTTGCAAAGAGCTTAAAAATCTGCCAAGTAGCTTCTTTTTGCTCCCAAAACTTGTCACTTTAAAAGTTGATGAATGCTCTCAACTTGGAGAATCATTTCAAAGGTTCCAAAAGAGCCGCCATTCCGTGGTAAATGGCAGTTCAAATTTAGTGACACTTCATTTTTGTGAGACTAATCCATCATATGAAGATCTTTGTGCCATTCTTGAAACTTTTCCAAAATTAGAAGACTTAAATGTATCACACAACGGATTTGTAGCCCTACCAAACATCATCGGAGGATCTTCTCACTTGAAAAGTTTGGATGTTAGTTTCTGCAGGAATCTTAAGGAAATTCCAGAACTTCCCTTAAGTATTCAGAAAGTAGATGCAAGATACTGTCAGTCCTTGACTTCAGAGGCATCAAGCATGCTATGGTCTAAGGTTTAA 2661 0.3946 MANHGDFTYDVFMSFKGENGTRYSFTDHLYRALLRHGINAFRDEQSLRSGDEIRPSLFQAIEASRISLVVLCQNYASSSWCLDELAKILHCYENKGKHVVAIFYLVEPSDVRYQKNSYATAMSKHENRYGKDSKKVKAWRSALSRVCDLTGIHYRNHMYETEVIEKIVKDTSAKLPPMPLQIKHLVGLDSRFERVKSLIDVESNDEVCILGIYGVGGIGKTTFAVDLYNKIRHHFEAASFLANVREKTNKSIKGLEDLQRTLLSEMGEETETIIGSTFKGSSEIKCRLGHKRVLLIVDDVDSVKQLEALAGGYDWFGPGSRIIITTRDKDVLHKHDVEIKGYKMEELNYQESLELFCWYAFNRSRAAENFANISTSAVRYAKGIPLALRVIGSNLKGRGPEECETELQKYRKVPDSEIQGVLEISYTSLSNLDQKIFLDIACFFKGERWDYVKRILDACDFNPDIKVFVSKCLITVDENGCLEMHDLIQDMGREIVRKESPSNPGYRSRLWCHKDVHEVLKENSGSDTVEGIMLYPPKQEKIDYWTMTAFKKMKNLRILIVRNAIFSSGPSYLPNSLRLIDWKGYPSKSFPPDFYPHRIVDFKLPHSSLIFKKPFQRFEDLTFINLSHCQFITQIPDLSGAKSLKVFTLDKCYRLTRFDKSIGFMPNLVYLSASECTLLTSFVPTMYLPSLEVLSFNFCRRLEHFPHVMQKMDKPLKIYMMSTAIKKIPESIGNLTGLEHIDMSVCKELKNLPSSFFLLPKLVTLKVDECSQLGESFQRFQKSRHSVVNGSSNLVTLHFCETNPSYEDLCAILETFPKLEDLNVSHNGFVALPNIIGGSSHLKSLDVSFCRNLKEIPELPLSIQKVDARYCQSLTSEASSMLWSKV 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium178g00005 886 Gene3D Ribonuclease Inhibitor 545 718 IPR032675 -
Vium178g00005 886 Gene3D Ribonuclease Inhibitor 719 883 IPR032675 -
Vium178g00005 886 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 754 IPR044974 GO:0006952
Vium178g00005 886 Gene3D - 7 174 IPR035897 -
Vium178g00005 886 SMART till_3 8 149 IPR000157 GO:0007165
Vium178g00005 886 Pfam TIR domain 9 182 IPR000157 GO:0007165
Vium178g00005 886 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 151 IPR035897 -
Vium178g00005 886 FunFam Disease resistance protein (TIR-NBS-LRR class) 6 176 - -
Vium178g00005 886 ProSiteProfiles TIR domain profile. 7 175 IPR000157 GO:0007165
Vium178g00005 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 440 IPR027417 -
Vium178g00005 886 PRINTS Disease resistance protein signature 733 749 - -
Vium178g00005 886 PRINTS Disease resistance protein signature 287 301 - -
Vium178g00005 886 PRINTS Disease resistance protein signature 381 395 - -
Vium178g00005 886 PRINTS Disease resistance protein signature 209 224 - -
Vium178g00005 886 Pfam NB-ARC domain 192 411 IPR002182 GO:0043531
Vium178g00005 886 Gene3D - 346 430 IPR042197 -
Vium178g00005 886 SUPERFAMILY L domain-like 498 877 - -
Vium178g00005 886 Gene3D - 175 341 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium178g00005 Vium-Chr178 11697 17842 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium178g00005 9 783 WRKY Transcription Factor Family AT4G12020 30.856 2.37e-90 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium178g00005 - - vum:124827482 1794.63