Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1789g00021 ATGATGACATCAAGCCGAAGAAGGAAGACCAAAAAGATGTTTGGAATGTGTGGTCATGATGATGAAAACGAAGAAGATAATGTAAGCGAGAGAGAAATCGAGGCAAGGGAAGATGGTAGCCAATACAGTCTCACAGGTGTTTTTCTTCCTTCTCTGGGTGCCACTGCTTTGACCAACGGTAGTCGGAGACAACAGCTTCGTCGTCATATCATCTTTCCATACAATCGTAATTACAGGCTATGGAACAAGTTTCTGCTAATATTGGTCTTCTACACGGCTTGGATATGTCCATTTGAATTTGGTTTTCTAGAAAAATCAAAGGGTGCCTTAGCTATAATCGACAATGTTGTAAATGGGTTTTTTGCCATTGACATTGTAATCACCTTTTTCGTTGCTTACCTTGATAAGTCTACTTATCTATTAGTTGATGACCACAAACTCATTGCTTTGAGATACGCTAAATCTTGGTTGATTTTGGATGTCATTGCTTGCATTCCATATGAAGTTGTTCGCAGTATGTTGCCACCTAGTCTTCAGTCCTATAGTTACTTAAATATTCTCCGACTTTGGCGTCTCCATCGAGTTAGTGCCATGTTTGCAAGATTGGAAAAGGATCGAAATTATAGCTACTTTTGGGTGCGTTGTTGCAAGCTTACATGTGTTACTCTATTCTCAGTGCATGCTGCAGCATGTTTTTTCTATTTTCTTGCTGGGAGAGATGATCCAAAAGATACATGGCTTTCGATTGTTCCTACAACCATCAACCAAGATATATGGGGAAAGTACGTAGTAGCTGTATATTGGTCCATAGTCACCCTTGCATCTGTTGGCTATGGTGATCTACATCCTGTAAATACAAAAGAAATGATATTTTGCATTTTTTATATGTTCTTCAACCTTGGACTCACCTCGTACTTGATAGGCAACATGACCAACATGGTTGTCCATTGGACTGAAAAAACTAAAAGATATAGAGATACTGTCCAATATGCCTCAAATTTTGCTCATAGGAATCAATTGCCTGCTCGTTTGCAAGAACAAATATTTGCTCATTTGCTTATGAGGTATAGAGCTGATATAGAAGGAGTACAACAACAAGAGATTATTGATTCCCTTCCGAAAGCCATTCAGTCAAGCATCGCACAATACTTATTCTTTTCACTTATTGACAAGGTGTACTTATTTCATGGAGTTTCAAATGACCTACTTTTTCAAATGGTCACAGAGATGAAGGCTGAGTATTTTCCTCCAAAGGAAGATGTGATTTTGCAAAATGAAGCACCAACAGAATTTTATATATTCGTTACAGGAGCTGCTGATCTTATCATTCAAAATAATGGATTAGAACAGATTGTTGGAGAAGTAAGGCAAGGAGATGTAGTTGGTGAAATAGGAGTCTTGTGTTATAGGCCACAATTGTTCACAGTCCGAACCAAGCGATTGAGCCAAATCTTACGTTTGAATCGAACCACATTTATAAATCTTACTCGTTCAAATGTTGGAGATGGAACAATGATCATAAACAATTTTCTTCAACATTTACATGAAATTGGGGGTCCAATTATGGAAGAAATTTTGGCAGAAGCAGAAGGAATGTTGGCTAGGGGTAAAATGGATTTGCCAATTAGTTTATTGTTTGCAGCTAGTAGAGGTGATGATATTATGTTGAATCAATTGTTAAAGAAGGGTTCAGATCCAAACGAACCGGACAAGAATGGAAAGACAGCATTGCATATTGCAGCTTGCAAAGGAAATGACCACTGTGTACTTGTCCTTGTGGAACATGGAGCAAATCCCAACATCAAAGACCTAGAAGGAAATTCACCACTGTGGGAAGCAATTAAGGGTGGACATGAAACTGTGACGAGAATTCTTATAGAAAATGGTGCAGAAATAACATCTCATGATGTGGTTGATTTTGCACGATTGGCTATTGAGAAAAACAACCTAGAAATTGTGAAGGAAATTATTCAACGTAAAGGGGAAGTGACAGAATGTGATAGTAAATTGACGACACTGCTCCATGCTGCAGTGTGTGAGGGAAATACTGAAATAGTGAAGTACCTAATAGAACTAGGAGCAGACATTGATAGACAAGATGATGTTGGGTTGACTGCAAGATCCTTAGCAGAACATCAATGTCATGAGGAAATACTAAACATTTTTAAGAAAATTGGACACAACATTAAACCAAATGCTCTTCCTCCTATTTCATCCATTGTTGGTAGGTGTCAAAGTGAACCTACAATACCAGTCATTCTCCAACCCAACAAACCACCTAATAAAGAACTCACCTGGTTTGATAAACATCAAAGAAGAAGGGTCAGCCCTTTCCACAATTCCTTTTTTGGAATCATGTCATCTGCAAATTATGCAACAAAAGATTCACCAAAATCATCTCAAATGATTCAAACTATTAAAGAGGAAGTGACAATGAGAGTAACACTTAGTTGTCCAGAGAAAGGTGAAGGTGCCAAGAAGCTTCTGTTTTTGCCAGATTCTATTGAAGAAATACTATATATTGGTGCTAAAAAGTTTGGTTGTTCTCCGACCAAAGTATTGACCACAGAAGGAGCTCAAATCGATGACATAGATGTTATAAGAGATGGTGATCATCTTGTTCTTGCATAG 2631 0.3801 MMTSSRRRKTKKMFGMCGHDDENEEDNVSEREIEAREDGSQYSLTGVFLPSLGATALTNGSRRQQLRRHIIFPYNRNYRLWNKFLLILVFYTAWICPFEFGFLEKSKGALAIIDNVVNGFFAIDIVITFFVAYLDKSTYLLVDDHKLIALRYAKSWLILDVIACIPYEVVRSMLPPSLQSYSYLNILRLWRLHRVSAMFARLEKDRNYSYFWVRCCKLTCVTLFSVHAAACFFYFLAGRDDPKDTWLSIVPTTINQDIWGKYVVAVYWSIVTLASVGYGDLHPVNTKEMIFCIFYMFFNLGLTSYLIGNMTNMVVHWTEKTKRYRDTVQYASNFAHRNQLPARLQEQIFAHLLMRYRADIEGVQQQEIIDSLPKAIQSSIAQYLFFSLIDKVYLFHGVSNDLLFQMVTEMKAEYFPPKEDVILQNEAPTEFYIFVTGAADLIIQNNGLEQIVGEVRQGDVVGEIGVLCYRPQLFTVRTKRLSQILRLNRTTFINLTRSNVGDGTMIINNFLQHLHEIGGPIMEEILAEAEGMLARGKMDLPISLLFAASRGDDIMLNQLLKKGSDPNEPDKNGKTALHIAACKGNDHCVLVLVEHGANPNIKDLEGNSPLWEAIKGGHETVTRILIENGAEITSHDVVDFARLAIEKNNLEIVKEIIQRKGEVTECDSKLTTLLHAAVCEGNTEIVKYLIELGADIDRQDDVGLTARSLAEHQCHEEILNIFKKIGHNIKPNALPPISSIVGRCQSEPTIPVILQPNKPPNKELTWFDKHQRRRVSPFHNSFFGIMSSANYATKDSPKSSQMIQTIKEEVTMRVTLSCPEKGEGAKKLLFLPDSIEEILYIGAKKFGCSPTKVLTTEGAQIDDIDVIRDGDHLVLA 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1789g00021 876 PRINTS Ankyrin repeat signature 573 588 IPR002110 GO:0005515
Vium1789g00021 876 PRINTS Ankyrin repeat signature 685 699 IPR002110 GO:0005515
Vium1789g00021 876 SUPERFAMILY Ankyrin repeat 544 728 IPR036770 -
Vium1789g00021 876 ProSiteProfiles Ankyrin repeat region circular profile. 572 603 - -
Vium1789g00021 876 ProSiteProfiles Ankyrin repeat region circular profile. 605 636 - -
Vium1789g00021 876 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515
Vium1789g00021 876 Pfam Ion transport protein 79 321 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium1789g00021 876 SUPERFAMILY cAMP-binding domain-like 319 514 IPR018490 -
Vium1789g00021 876 Pfam Ankyrin repeats (3 copies) 544 635 IPR002110 GO:0005515
Vium1789g00021 876 Pfam Ankyrin repeats (3 copies) 643 700 IPR002110 GO:0005515
Vium1789g00021 876 MobiDBLite consensus disorder prediction 14 32 - -
Vium1789g00021 876 PANTHER POTASSIUM CHANNEL AKT1 40 875 IPR045319 GO:0005249|GO:0006813
Vium1789g00021 876 Gene3D - 541 724 IPR036770 -
Vium1789g00021 876 ProSiteProfiles Ankyrin repeat region circular profile. 669 701 - -
Vium1789g00021 876 Pfam KHA, dimerisation domain of potassium ion channel 813 875 IPR021789 -
Vium1789g00021 876 CDD CAP_ED 394 499 IPR000595 -
Vium1789g00021 876 MobiDBLite consensus disorder prediction 1 32 - -
Vium1789g00021 876 ProSiteProfiles KHA domain profile. 813 876 IPR021789 -
Vium1789g00021 876 Gene3D Jelly Rolls 359 516 IPR014710 -
Vium1789g00021 876 Gene3D - 81 315 - -
Vium1789g00021 876 SUPERFAMILY Voltage-gated potassium channels 73 315 - -
Vium1789g00021 876 SMART ANK_2a 572 601 IPR002110 GO:0005515
Vium1789g00021 876 SMART ANK_2a 539 568 IPR002110 GO:0005515
Vium1789g00021 876 SMART ANK_2a 605 634 IPR002110 GO:0005515
Vium1789g00021 876 SMART ANK_2a 669 698 IPR002110 GO:0005515
Vium1789g00021 876 SMART ANK_2a 636 665 IPR002110 GO:0005515
Vium1789g00021 876 PRINTS EAG/ELK/ERG potassium channel family signature 288 299 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium1789g00021 876 PRINTS EAG/ELK/ERG potassium channel family signature 91 98 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium1789g00021 876 PRINTS EAG/ELK/ERG potassium channel family signature 306 315 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium1789g00021 876 PRINTS EAG/ELK/ERG potassium channel family signature 262 279 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium1789g00021 876 PRINTS EAG/ELK/ERG potassium channel family signature 114 124 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium1789g00021 876 PRINTS EAG/ELK/ERG potassium channel family signature 125 134 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vium1789g00021 876 SMART cnmp_10 394 511 IPR000595 -
Vium1789g00021 876 FunFam Potassium channel KAT3 80 316 - -
Vium1789g00021 876 ProSiteProfiles Ankyrin repeat profile. 669 701 IPR002110 GO:0005515
Vium1789g00021 876 Pfam Cyclic nucleotide-binding domain 414 498 IPR000595 -
Vium1789g00021 876 ProSiteProfiles Ankyrin repeat profile. 572 604 IPR002110 GO:0005515
Vium1789g00021 876 FunFam Potassium channel KAT2 382 517 - -
Vium1789g00021 876 ProSiteProfiles cAMP/cGMP binding motif profile. 394 513 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1789g00021 Vium-Chr1789 152915 159963 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1789g00021 22 876 Ion Channels AT2G25600 55.696 0.0 960
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1789g00021 K21867 - gmx:100808832 1352.04