Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1789g00011 ATGGCAAAGAAGAAGAATTGTCTGGTATTTATGGATGTGTCCATAGATGGGGATCCGGTTGAAAGGATGGTTTTTGAGCTTTTCTATGATGTTGCTCCGAAGACTGCTGAAAATTTCCGTGCATTATGCACAGGAGAAAGAGGAGTCAGTCCAAACACTGGAAAGTCACTACATTACAAGGGTTCTTTCTTTCATCAAATCGTTAAAGGCTCCATTGCCCGGGGAGGTGATTTTGTAAACCGAAATGGGACTGGTGGAGAAAGCATTTATGGTTCCAAGTTCCCAGATGAATCACCTAGGCTAAAGCACGATGCTCCAGGCCTTCTTTCCATGCCAGTTGCTGATCGTGACACTCTTGGTTCTCATTTTATCATCACTTTTAAAGCTGATCCACATCTTGATAGGAAACATGTAATCTTTGGAAAGCTTGTGCAAGGAGATAAAATATTGAAGAAAATTGAAGATGTGGGTGATGAAGAAGGACTTCCAAGCGTAACTGTTAAAATAATTAGTTGTGGTGAACATAATGAGGATGGAAAGAAGATAAATAAGTCAAAAAAGGGAAGACTTGGATCTTCTGAAACCCATAGTCCTGAACTGCACAGGGGAAAGCACAAAAAATCTTCAGGTGACAAAAGGAAAAGAAGAAAGTACTACTCATCAGAATCGAGTAGTTCCTCAGATTCAGACATGAGATCATCAGAAAGTGATAGTGATTCTGACTCGGATACATCTTCATCTTACACAAGTTCCTCCAGTGATGACAGGCGGAGAAAGAGAAAGAGGTCTAGGAAAGATAAACATAGACGCGGAAAAAGAAGAGACCAACACCGAGACAAGAGACGAAGGAAACAAGACAAAAGGTCAAAACGCAAATCAAGAAGGGAATTGACCTGTCATACGGATTCAGATAGTGATAATAAGACCGGCAACAGCTCTGGTGGTGAAAGCCGTGGTGCTCAAGCAAAAGATCAAAAGCATAAAGATCATTCTCAGAAGCATGCTGAAGGTCAGTCTTCCTTGGTTGTGGATAAAGAATTACCTGCTGTGCTCCTCACAAAAGGGGAGAAACTGAACATGCTGGAGGAGGAAAAATTCCCAAAGGAAAATGGACAGCGGCGTAGCAATGGCAATGGAGCCAACTATAGATCTGACAGAAGTGAAGGGAGGCAGCCTGATGTGATGGATGATCAACCAGGCAAATCTAGGAGTCAAAGCATGAGTATTAGTCCAAAGCGTGAGAGCAGAAGTCCTAGCATTAGTCAAAAAAGGAGGTTGAGCAGAAGTCCAAGTGGTAGTAGAAGCCCTCAAGCTCCATTACGGAGGAGTTTGAGCGGGAGTCCAAACAGAAGAAGCATCAGCAAAAGCCCAGTGAGAGGTAGAAAGGGGAAAAGTGTCAGTAAAAGCCCTGTGCGATCTCGTGGATATAGAAGTGTCAGTACAAGCCCTGTTAGATCCCTTTCCCGGAGCCACCAGAGGACTTCATCCAGAGCACCATCACGAAGATCAATCAGCAGAAGTCCTGTGATTAATCATAATCATAGAAGTGTCAGTAGAAGTCCTATTAGATATCGTGATCATAGAAGTGTTAGTGTAAGCCCTGCAAGATCCCTTTCCCGGAGCCGCAAGAGTTCACCCAGAGCACGATCACAAAGATCAATCAGCAGAAGCCCTGTGAGAACACACAATCATAGAAGTGTCAATAGAAGCCCTGTGAGATCTAGTGGTCGGAGAAGTGTCAGTGCAAGCCCTGTGAGACCCCTTTCTCGGAGCCGGAGGAGGAGTTCACCCAGAGCGCCATCTCGAAGATCAATCAGTAGAAGTCCATTGAAAACTGATATTCGTAGAAATGTTAGTAGAAGCCCTGTGAGATCCCATGGTCATAGAAGTGCGAGCGCAAGCCCTGTAAGATCGCCTTCACGGGGCCGCAGGAGGACTTCACCCAGAGCACAATCACGAAGATCAATCAGCAGAAGCCCTGTAAGAGTGTCCAGAAAGACCATCAGCAGGAGTCCAGTTAGATCATCGGCCAGAAGCATGAGCAGAAGCTTGAGCAGAAGTTCTGGCAGAGTCCCTGTAAGAAGCATCAGCCGAAGTCCAGCTAGAGTGCCAAGCAGAGGCAATCGCCACAGTTATTCTAGGAGTCCACGTGGTAGAAGCTTGTCTAGAAGTGTGTCACCTGATGTTTCCCCAAAACGTATTAGAAGGGGAAGAGGTTTCAGTGAACAGTACTCCTATGCTAGAAGGTATAGAACTCCCTCTCGATCTCCTGTGAGGTCGTACCGCTATAATGGAAGAAGTTACCGTGACAGATATTCAGGTTACAGGAGGTACTCCCCTAGGCGTAATAGGAGCCCACTTCCACGTAGAAGAACTCCACCAAGGTTCCGGAGGAGGAGCAGGACGCCATCTGTATCACGCAGTCCCCGATATCGAGGACGACGATATAGCCGAAGCCGTAGCCCCGTTCGAAGCCGTAGCCCTGTTCGCAGTCGTTCACCTGTCGGTACATTTCGACCTCGTGTTGAGAAGAGCAGGTCTTTATCCAGGAGTAGAAGTCCTTCACGATCCAGGGCTTCTATGGAATCACAATCTCCACTGAAGGCGAGCAGGAACAGTAGGTCAAGGTCCCCCCCTGAAAGCCCAAATGCAAAGAAAGGCCTTGTATCCTACGGAGATGGTTCTCCCTATTCAAACTAA 2700 0.463 MAKKKNCLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALCTGERGVSPNTGKSLHYKGSFFHQIVKGSIARGGDFVNRNGTGGESIYGSKFPDESPRLKHDAPGLLSMPVADRDTLGSHFIITFKADPHLDRKHVIFGKLVQGDKILKKIEDVGDEEGLPSVTVKIISCGEHNEDGKKINKSKKGRLGSSETHSPELHRGKHKKSSGDKRKRRKYYSSESSSSSDSDMRSSESDSDSDSDTSSSYTSSSSDDRRRKRKRSRKDKHRRGKRRDQHRDKRRRKQDKRSKRKSRRELTCHTDSDSDNKTGNSSGGESRGAQAKDQKHKDHSQKHAEGQSSLVVDKELPAVLLTKGEKLNMLEEEKFPKENGQRRSNGNGANYRSDRSEGRQPDVMDDQPGKSRSQSMSISPKRESRSPSISQKRRLSRSPSGSRSPQAPLRRSLSGSPNRRSISKSPVRGRKGKSVSKSPVRSRGYRSVSTSPVRSLSRSHQRTSSRAPSRRSISRSPVINHNHRSVSRSPIRYRDHRSVSVSPARSLSRSRKSSPRARSQRSISRSPVRTHNHRSVNRSPVRSSGRRSVSASPVRPLSRSRRRSSPRAPSRRSISRSPLKTDIRRNVSRSPVRSHGHRSASASPVRSPSRGRRRTSPRAQSRRSISRSPVRVSRKTISRSPVRSSARSMSRSLSRSSGRVPVRSISRSPARVPSRGNRHSYSRSPRGRSLSRSVSPDVSPKRIRRGRGFSEQYSYARRYRTPSRSPVRSYRYNGRSYRDRYSGYRRYSPRRNRSPLPRRRTPPRFRRRSRTPSVSRSPRYRGRRYSRSRSPVRSRSPVRSRSPVGTFRPRVEKSRSLSRSRSPSRSRASMESQSPLKASRNSRSRSPPESPNAKKGLVSYGDGSPYSN 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1789g00011 899 MobiDBLite consensus disorder prediction 701 727 - -
Vium1789g00011 899 Gene3D - 1 175 IPR029000 -
Vium1789g00011 899 SUPERFAMILY Cyclophilin-like 5 176 IPR029000 -
Vium1789g00011 899 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Vium1789g00011 899 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Vium1789g00011 899 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Vium1789g00011 899 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Vium1789g00011 899 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Vium1789g00011 899 MobiDBLite consensus disorder prediction 471 517 - -
Vium1789g00011 899 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 182 - -
Vium1789g00011 899 MobiDBLite consensus disorder prediction 568 590 - -
Vium1789g00011 899 MobiDBLite consensus disorder prediction 852 880 - -
Vium1789g00011 899 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 174 - -
Vium1789g00011 899 MobiDBLite consensus disorder prediction 624 641 - -
Vium1789g00011 899 MobiDBLite consensus disorder prediction 782 805 - -
Vium1789g00011 899 MobiDBLite consensus disorder prediction 652 694 - -
Vium1789g00011 899 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Vium1789g00011 899 MobiDBLite consensus disorder prediction 176 899 - -
Vium1789g00011 899 MobiDBLite consensus disorder prediction 398 454 - -
Vium1789g00011 899 MobiDBLite consensus disorder prediction 357 371 - -
Vium1789g00011 899 MobiDBLite consensus disorder prediction 257 294 - -
Vium1789g00011 899 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 173 IPR002130 GO:0000413|GO:0003755
Vium1789g00011 899 MobiDBLite consensus disorder prediction 304 319 - -
Vium1789g00011 899 MobiDBLite consensus disorder prediction 176 205 - -
Vium1789g00011 899 MobiDBLite consensus disorder prediction 320 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1789g00011 Vium-Chr1789 71706 83754 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1789g00011 25 170 U-box Gene Family AT5G67530 38.514 1.81e-19 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1789g00011 K09566 - gmx:100801588 743.421