Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1789g00007 ATGTTGTCCGAGTTGCAAGCCATGTTCCATTTTCATGTTTGCTGTGACAATGGGACCAGTGGAGAAAGCATATATGGTTCCAAGTTCCCAGATGAATCACCTAGGCTAAAGCATGATGTTCCAGGCCTTCTTTCAATGCCTGTTGCTGATCGTGACACTCTTGGTTCTCATTTTATAATCACTTTTAAAGCTGATCCCCATCTTGATAGGAAACATGTAGTCTTTGGCAAGCTTGTACTAGGTCATGATATATTGAAGAAAATTGAAGATGTGGGTGATAAAGAAGGACTTCCAAGTGTAACTGTTAAAATAATTAATTGTGGTGAACATAATGAGGATGAAAAGAAGATAAATAAATCAAAGAAGGGAAGAGATGGATCTTCTGAAACAAATAGTCATTTACTGCATAAGGGAAAGCACAGAAAATCTTCAGGTGACAAAAGGAAAAGGAGAAAGTACTACTCATCAGAATCTGATACTTCCTCAGATTCAGAGACAACATCTTCTGAAAGTGACAGTGATTCTGATTCTGATATGTCTTCATCATCTTACACAAGTTCCTCCAGCGATGATAGGCGGAGAAAGAGAAAGAGGTCTAGGAAAGATAAACATAAACGTGGAAAAAAAAGAGATAAACACCGAGAAAAGAGACGGAGGAAACAAGATAAAAGATCAAAGCGTAGATCAAAGAGGGAATCGCCAAGTCATACTGATTCAGATAGTGAAAGTAAGAGCAACAAAGGCTCTGATATTGAAAGTTATGGTGCCAAAGTGAATGATCAGAATCATGAAGACCATTCTCAGAGACATGCTGAAGGTCAGTCTTCCTCAGTTGTCGAGAAAGAATTACCTCCAATGCACCCTAAAAAGAGGGAGAAACTGGATATATTGAAAGAGGAAGAATTCCCAAAGGAAAATGGAGAGCGGCGTAGCAATGGCACTGGAGTCAACTATAGATCTGAAAGAAGTGAAGTGAGGCAGCCTGATGTGATGGATGATCGACCAGACAAATCTAGGAGTCAAAGCATGAGTGTTAGTCCTAGGAGGCGCAAGAGCAAAAGCCCAAGCATTAGTCCAAAAAGGAGGTTGGACAGAAGTCCAAGTGGCAGTAGAAGTCCTCATGCTCCACTACAGAGGAGTTTGAGCCAGAGTCCTGTTAGAAGTGCAAGGAGGAGTCCAAGCAGAAGCGCCAGTAGAAGCCCAATGAGAGGTAGGAAAGGTAGAAGTATCAGTAGAAGCTCTGTAAGGCATCATGGACATCAAAGTGTCAGCACAAGCCCTGTAAGACCCCTTTCTCGGAGCTACCAGAGGACTTCACCAAAAACATCATCACGAAGATCAATCAGCAGAAGCCCTACGACATCTCGAAGAAGTGTCAGTGCAAGCCCAGGAAGATCCCCTTCTCAGAGCCAAAGGAGTTTGCCCATAGCACCATCACGTCGATCAATCAGCAGAAGCCCAGTAAGAAATCACCGACTTAGAAGTGTCAGTAGAAGCCCTTTAAGATCTCAAGGTCATAGAAGTGATAGTGGAAGCCCTGTAAGATCCCTCACACCGAGTCATCGAATATCACCCAGAACAAAATCTAGGAGATCAATCAGCAGAAGCCCTGTGAGAACTCGCAACTATAAAAGTATCAACAAAGGCACCTTGAGATCTCGTGGTCGTAGAACAAGCAGTGGAAGCCCTGTAAGATCCCTTTCTCGAAGTGGCCGTAGGAGTTCACCAAGAGCACTTTCACAAAGATCAATCAGTAGAAGCCCTGTGAAAACTGGCAATCATAGAAGTGTAAGTAGAAGCCCCTTGCGATCTCATGGTCACAGGACTGTGAGTGCTAGCCCTGTTAGATCACCTTCATGGGAGCGTCAAAAAAGTTCACCTAGAGCGCCATCACGAAGATTGGTCAGTAGAAGCCCGGTAAGAGTGTCAAGAAAGAGTTTAAGCAGGAGTCCAGTTCGATCATCTGCCAGAAGCTTGAGCAGAAGCTCTGGCAGAGTCCCTTTGAGAAGCAATAGTCGGAGTCCAGTTAGAGGGCCAAGCAGAGTCCATCGTCGCAGTTATTCTAGGAGTCCTCGTGGTAGGAGTTTGTCTAGAAGTTTGTCACCTAATGTTTCCCCAAAACGTATAAGAAGGGGAAGAGGTTTTAGCGAACGATATTCTTATGCTAGAAGGTATAGGACTCCTTCTCGATCTCCTGTGAGATCATACCGCTATAATGGAAGAAGTGAACGTGACAGATATTCAGGTTACAGAAGGTACTCCCCAAGGCGTAACAGGAGCCCGCCACCACGCAGAAGAACCCCACCAAGGTTCCGGAGTAGGAGGAGCAGGACACCATCTGTTTCTCGCAGTCCACGGTACAGGGGTCGACGGTACAGTCGAAGCCGTAGCCCTGTTCGCAGTCGTTCACCTGTGGGCACGTATCGACGCCGTGTTGAGAGGAGCAGGTCTTTGTCCCGGAGTAGCAGGTCTTTGTCCCGGAGCAAGAGTCCATCAGTATCCAGGGCTTCAGTGGAATCACAATCTCCACGAAAGAACAGCAGGTCAAGGTCCCGGTCCCAAAGCTCAGAAGGAAAGAAAGGCCTTGTATCTTACGGAGACGGTTCTCCAGATTCAAGCTGA 2622 0.455 MLSELQAMFHFHVCCDNGTSGESIYGSKFPDESPRLKHDVPGLLSMPVADRDTLGSHFIITFKADPHLDRKHVVFGKLVLGHDILKKIEDVGDKEGLPSVTVKIINCGEHNEDEKKINKSKKGRDGSSETNSHLLHKGKHRKSSGDKRKRRKYYSSESDTSSDSETTSSESDSDSDSDMSSSSYTSSSSDDRRRKRKRSRKDKHKRGKKRDKHREKRRRKQDKRSKRRSKRESPSHTDSDSESKSNKGSDIESYGAKVNDQNHEDHSQRHAEGQSSSVVEKELPPMHPKKREKLDILKEEEFPKENGERRSNGTGVNYRSERSEVRQPDVMDDRPDKSRSQSMSVSPRRRKSKSPSISPKRRLDRSPSGSRSPHAPLQRSLSQSPVRSARRSPSRSASRSPMRGRKGRSISRSSVRHHGHQSVSTSPVRPLSRSYQRTSPKTSSRRSISRSPTTSRRSVSASPGRSPSQSQRSLPIAPSRRSISRSPVRNHRLRSVSRSPLRSQGHRSDSGSPVRSLTPSHRISPRTKSRRSISRSPVRTRNYKSINKGTLRSRGRRTSSGSPVRSLSRSGRRSSPRALSQRSISRSPVKTGNHRSVSRSPLRSHGHRTVSASPVRSPSWERQKSSPRAPSRRLVSRSPVRVSRKSLSRSPVRSSARSLSRSSGRVPLRSNSRSPVRGPSRVHRRSYSRSPRGRSLSRSLSPNVSPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRSERDRYSGYRRYSPRRNRSPPPRRRTPPRFRSRRSRTPSVSRSPRYRGRRYSRSRSPVRSRSPVGTYRRRVERSRSLSRSSRSLSRSKSPSVSRASVESQSPRKNSRSRSRSQSSEGKKGLVSYGDGSPDSS 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1789g00007 873 MobiDBLite consensus disorder prediction 538 632 - -
Vium1789g00007 873 SUPERFAMILY Cyclophilin-like 14 113 IPR029000 -
Vium1789g00007 873 MobiDBLite consensus disorder prediction 371 399 - -
Vium1789g00007 873 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 17 109 IPR002130 GO:0000413|GO:0003755
Vium1789g00007 873 MobiDBLite consensus disorder prediction 821 849 - -
Vium1789g00007 873 MobiDBLite consensus disorder prediction 283 308 - -
Vium1789g00007 873 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 21 108 IPR002130 GO:0000413|GO:0003755
Vium1789g00007 873 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 16 109 - -
Vium1789g00007 873 MobiDBLite consensus disorder prediction 416 484 - -
Vium1789g00007 873 MobiDBLite consensus disorder prediction 257 271 - -
Vium1789g00007 873 MobiDBLite consensus disorder prediction 322 339 - -
Vium1789g00007 873 MobiDBLite consensus disorder prediction 401 415 - -
Vium1789g00007 873 MobiDBLite consensus disorder prediction 737 752 - -
Vium1789g00007 873 MobiDBLite consensus disorder prediction 231 247 - -
Vium1789g00007 873 MobiDBLite consensus disorder prediction 193 230 - -
Vium1789g00007 873 MobiDBLite consensus disorder prediction 112 873 - -
Vium1789g00007 873 MobiDBLite consensus disorder prediction 710 724 - -
Vium1789g00007 873 Gene3D - 8 111 IPR029000 -
Vium1789g00007 873 MobiDBLite consensus disorder prediction 806 820 - -
Vium1789g00007 873 MobiDBLite consensus disorder prediction 159 187 - -
Vium1789g00007 873 MobiDBLite consensus disorder prediction 112 134 - -
Vium1789g00007 873 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 70 85 IPR002130 GO:0000413|GO:0003755
Vium1789g00007 873 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 57 69 IPR002130 GO:0000413|GO:0003755
Vium1789g00007 873 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 57 IPR002130 GO:0000413|GO:0003755
Vium1789g00007 873 MobiDBLite consensus disorder prediction 135 149 - -
Vium1789g00007 873 MobiDBLite consensus disorder prediction 757 781 - -
Vium1789g00007 873 MobiDBLite consensus disorder prediction 641 677 - -
Vium1789g00007 873 MobiDBLite consensus disorder prediction 497 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1789g00007 Vium-Chr1789 37081 42935 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1789g00007 18 105 U-box Gene Family AT5G67530 40.000 1.18e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1789g00007 K09566 - gmx:100801588 656.366