Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1789g00006 ATGTACAGGAGAAATGGGAGTTGGTCCAAACACTGGAAAATCACTGCACTACAAGGGTTCTTTCTTCCATCGGATTGTGAAAGGCTCCATTGCCCGGGATACAGGGCTGATGGTCACGACTTCCTTTCTTGTGATATAGTTTTAAGGGTGGTGATTTTGTCAATCGAAATGTTGTCCGAGTTGCAAGCCATGTTCCATTTTCATGTTTGCTGTGACAATGGGACCAGTGGAGAAAGCATATATGGTTCCAAGTTCCCAGATGAATCACCTAGGCTAAAGCATGATGTTCCAGGCCTTCTTTCAATGCCTGTTGCTGATCGTGACACTCTTGGTTCTCATTTTATAATCACTTTTAAAGCTGATCCCCATCTTGATAGGAAACATGTAGTCTTTGGCAAGCTTGTACTAGGTCATGATATATTGAAGAAAATTGAAGATGTGGGTGATAAAGAAGGACTTCCAAGTGTAACTGTTAAAATAATTAATTGTGGTGAACATAATGAGGATGAAAAGAAGATAAATAAATCAAAGAAGGGAAGAGATGGATCTTCTGAAACAAATAGTCATTTACTGCATAAGGGAAAGCACAGAAAATCTTCAGGTGACAAAAGGAAAAGGAGAAAGTACTACTCATCAGAATCTGATACTTCCTCAGATTCAGAGACAACATCTTCTGAAAGTGACAGTGATTCTGATTCTGATATGTCTTCATCATCTTACACAAGTTCCTCCAGCGATGATAGGCGGAGAAAGAGAAAGAGGTCTAGGAAAGATAAACATAAACGTGGAAAAAAAAGAGATAAACACCGAGAAAAGAGACGGAGGAAACAAGATAAAAGATCAAAGCGTAGATCAAAGAGGGAATCGCCAAGTCATACTGATTCAGATAGTGAAAGTAAGAGCAACAAAGGCTCTGATATTGAAAGTTATGGTGCCAAAGTGAATGATCAGAATCATGAAGACCATTCTCAGAGACATGCTGAAGGTCAGTCTTCCTCAGTTGTCGAGAAAGAATTACCTCCAATGCACCCTAAAAAGAGGGAGAAACTGGATATATTGAAAGAGGAAGAATTCCCAAAGGAAAATGGAGAGCGGCGTAGCAATGGCACTGGAGTCAACTATAGATCTGAAAGAAGTGAAGTGAGGCAGCCTGATGTGATGGATGATCGACCAGACAAATCTAGGAGTCAAAGCATGAGTGTTAGTCCTAGGAGGCGCAAGAGCAAAAGCCCAAGCATTAGTCCAAAAAGGAGGTTGGACAGAAGTCCAAGTGGCAGTAGAAGTCCTCATGCTCCACTACAGAGGAGTTTGAGCCAGAGTCCTGTTAGAAGTGCAAGGAGGAGTCCAAGCAGAAGCGCCAGTAGAAGCCCAATGAGAGGTAGGAAAGGTAGAAGTATCAGTAGAAGCTCTGTAAGGCATCATGGACATCAAAGTGTCAGCACAAGCCCTGTAAGACCCCTTTCTCGGAGCTACCAGAGGACTTCACCAAAAACATCATCACGAAGATCAATCAGCAGAAGCCCTACGACATCTCGAAGAAGTGTCAGTGCAAGCCCAGGAAGATCCCCTTCTCAGAGCCAAAGGAGTTTGCCCATAGCACCATCACGTCGATCAATCAGCAGAAGCCCAGTAAGAAATCACCGACTTAGAAGTGTCAGTAGAAGCCCTTTAAGATCTCAAGGTCATAGAAGTGATAGTGGAAGCCCTGTAAGATCCCTCACACCGAGTCATCGAATATCACCCAGAACAAAATCTAGGAGATCAATCAGCAGAAGCCCTGTGAGAACTCGCAACTATAAAAGTATCAACAAAGGCACCTTGAGATCTCGTGGTCGTAGAACAAGCAGTGGAAGCCCTGTAAGATCCCTTTCTCGAAGTGGCCGTAGGAGTTCACCAAGAGCACTTTCACAAAGATCAATCAGTAGAAGCCCTGTGAAAACTGGCAATCATAGAAGTGTAAGTAGAAGCCCCTTGCGATCTCATGGTCACAGGACTGTGAGTGCTAGCCCTGTTAGATCACCTTCATGGGAGCGTCAAAAAAGTTCACCTAGAGCGCCATCACGAAGATTGGTCAGTAGAAGCCCGGTAAGAGTGTCAAGAAAGAGTTTAAGCAGGAGTCCAGTTCGATCATCTGCCAGAAGCTTGAGCAGAAGCTCTGGCAGAGTCCCTTTGAGAAGCAATAGTCGGAGTCCAGTTAGAGGGCCAAGCAGAGTCCATCGTCGCAGTTATTCTAGGAGTCCTCGTGGTAGGAGTTTGTCTAGAAGTTTGTCACCTAATGTTTCCCCAAAACGTATAAGAAGGGGAAGAGGTTTTAGCGAACGATATTCTTATGCTAGAAGGTATAGGACTCCTTCTCGATCTCCTGTGAGATCATACCGCTATAATGGAAGAAGTGAACGTGACAGATATTCAGGTTACAGAAGGTACTCCCCAAGGCGTAACAGGAGCCCGCCACCACGCAGAAGAACCCCACCAAGGTTCCGGAGTAGGAGGAGCAGGACACCATCTGTTTCTCGCAGTCCACGGTACAGGGGTCGACGGTACAGTCGAAGCCGTAGCCCTGTTCGCAGTCGTTCACCTGTGGGCACGTATCGACGCCGTGTTGAGAGGAGCAGGTCTTTGTCCCGGAGTAGCAGGTCTTTGTCCCGGAGCAAGAGTCCATCAGTATCCAGGGCTTCAGTGGAATCACAATCTCCACGAAAGAACAGCAGGTCAAGGTCCCGGTCCCAAAGCTCAGAAGGAAAGAAAGGCCTTGTATCTTACGGAGACGGTTCTCCAGATTCAAGCTGA 2790 0.4545 MYRRNGSWSKHWKITALQGFFLPSDCERLHCPGYRADGHDFLSCDIVLRVVILSIEMLSELQAMFHFHVCCDNGTSGESIYGSKFPDESPRLKHDVPGLLSMPVADRDTLGSHFIITFKADPHLDRKHVVFGKLVLGHDILKKIEDVGDKEGLPSVTVKIINCGEHNEDEKKINKSKKGRDGSSETNSHLLHKGKHRKSSGDKRKRRKYYSSESDTSSDSETTSSESDSDSDSDMSSSSYTSSSSDDRRRKRKRSRKDKHKRGKKRDKHREKRRRKQDKRSKRRSKRESPSHTDSDSESKSNKGSDIESYGAKVNDQNHEDHSQRHAEGQSSSVVEKELPPMHPKKREKLDILKEEEFPKENGERRSNGTGVNYRSERSEVRQPDVMDDRPDKSRSQSMSVSPRRRKSKSPSISPKRRLDRSPSGSRSPHAPLQRSLSQSPVRSARRSPSRSASRSPMRGRKGRSISRSSVRHHGHQSVSTSPVRPLSRSYQRTSPKTSSRRSISRSPTTSRRSVSASPGRSPSQSQRSLPIAPSRRSISRSPVRNHRLRSVSRSPLRSQGHRSDSGSPVRSLTPSHRISPRTKSRRSISRSPVRTRNYKSINKGTLRSRGRRTSSGSPVRSLSRSGRRSSPRALSQRSISRSPVKTGNHRSVSRSPLRSHGHRTVSASPVRSPSWERQKSSPRAPSRRLVSRSPVRVSRKSLSRSPVRSSARSLSRSSGRVPLRSNSRSPVRGPSRVHRRSYSRSPRGRSLSRSLSPNVSPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRSERDRYSGYRRYSPRRNRSPPPRRRTPPRFRSRRSRTPSVSRSPRYRGRRYSRSRSPVRSRSPVGTYRRRVERSRSLSRSSRSLSRSKSPSVSRASVESQSPRKNSRSRSRSQSSEGKKGLVSYGDGSPDSS 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1789g00006 929 MobiDBLite consensus disorder prediction 697 733 - -
Vium1789g00006 929 MobiDBLite consensus disorder prediction 877 905 - -
Vium1789g00006 929 MobiDBLite consensus disorder prediction 594 688 - -
Vium1789g00006 929 Gene3D - 57 167 IPR029000 -
Vium1789g00006 929 MobiDBLite consensus disorder prediction 472 540 - -
Vium1789g00006 929 MobiDBLite consensus disorder prediction 427 455 - -
Vium1789g00006 929 MobiDBLite consensus disorder prediction 378 395 - -
Vium1789g00006 929 MobiDBLite consensus disorder prediction 793 808 - -
Vium1789g00006 929 MobiDBLite consensus disorder prediction 313 327 - -
Vium1789g00006 929 SUPERFAMILY Cyclophilin-like 70 169 IPR029000 -
Vium1789g00006 929 MobiDBLite consensus disorder prediction 339 364 - -
Vium1789g00006 929 MobiDBLite consensus disorder prediction 457 471 - -
Vium1789g00006 929 MobiDBLite consensus disorder prediction 287 303 - -
Vium1789g00006 929 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 77 164 IPR002130 GO:0000413|GO:0003755
Vium1789g00006 929 MobiDBLite consensus disorder prediction 249 286 - -
Vium1789g00006 929 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 31 165 IPR002130 GO:0000413|GO:0003755
Vium1789g00006 929 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 72 165 - -
Vium1789g00006 929 MobiDBLite consensus disorder prediction 168 929 - -
Vium1789g00006 929 MobiDBLite consensus disorder prediction 862 876 - -
Vium1789g00006 929 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Vium1789g00006 929 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Vium1789g00006 929 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Vium1789g00006 929 MobiDBLite consensus disorder prediction 766 780 - -
Vium1789g00006 929 MobiDBLite consensus disorder prediction 215 243 - -
Vium1789g00006 929 MobiDBLite consensus disorder prediction 813 837 - -
Vium1789g00006 929 MobiDBLite consensus disorder prediction 191 205 - -
Vium1789g00006 929 MobiDBLite consensus disorder prediction 168 190 - -
Vium1789g00006 929 MobiDBLite consensus disorder prediction 553 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1789g00006 Vium-Chr1789 37081 43406 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1789g00006 74 161 U-box Gene Family AT5G67530 40.000 8.70e-09 57.4