Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1789g00005 ATGGCGAAGAAGAAGAATTCTCTGGTGTTTATGGATGTGTCCATAGATGGGGATCCTGTTGAAAGGATGGTTTTTGAGCTCTTCTATGATGTTGCTCCGAAGACTGCTGAAAATTTCCGTGCTTTATGTACAGGAGAAATGGGAGTTGGTCCAAACACTGGAAAATCACTGCACTACAAGGGTTCTTTCTTCCATCGGATTGTGAAAGGCTCCATTGCCCGGGGTGGTGATTTTGTCAATCGAAATGGGACCAGTGGAGAAAGCATATATGGTTCCAAGTTCCCAGATGAATCACCTAGGCTAAAGCATGATGTTCCAGGCCTTCTTTCAATGCCTGTTGCTGATCGTGACACTCTTGGTTCTCATTTTATAATCACTTTTAAAGCTGATCCCCATCTTGATAGGAAACATGTAGTCTTTGGCAAGCTTGTACTAGGTCATGATATATTGAAGAAAATTGAAGATGTGGGTGATAAAGAAGGACTTCCAAGTGTAACTGTTAAAATAATTAATTGTGGTGAACATAATGAGGATGAAAAGAAGATAAATAAATCAAAGAAGGGAAGAGATGGATCTTCTGAAACAAATAGTCATTTACTGCATAAGGGAAAGCACAGAAAATCTTCAGGTGACAAAAGGAAAAGGAGAAAGTACTACTCATCAGAATCTGATACTTCCTCAGATTCAGAGACAACATCTTCTGAAAGTGACAGTGATTCTGATTCTGATATGTCTTCATCATCTTACACAAGTTCCTCCAGCGATGATAGGCGGAGAAAGAGAAAGAGGTCTAGGAAAGATAAACATAAACGTGGAAAAAAAAGAGATAAACACCGAGAAAAGAGACGGAGGAAACAAGATAAAAGATCAAAGCGTAGATCAAAGAGGGAATCGCCAAGTCATACTGATTCAGATAGTGAAAGTAAGAGCAACAAAGGCTCTGATATTGAAAGTTATGGTGCCAAAGTGAATGATCAGAATCATGAAGACCATTCTCAGAGACATGCTGAAGGTCAGTCTTCCTCAGTTGTCGAGAAAGAATTACCTCCAATGCACCCTAAAAAGAGGGAGAAACTGGATATATTGAAAGAGGAAGAATTCCCAAAGGAAAATGGAGAGCGGCGTAGCAATGGCACTGGAGTCAACTATAGATCTGAAAGAAGTGAAGTGAGGCAGCCTGATGTGATGGATGATCGACCAGACAAATCTAGGAGTCAAAGCATGAGTGTTAGTCCTAGGAGGCGCAAGAGCAAAAGCCCAAGCATTAGTCCAAAAAGGAGGTTGGACAGAAGTCCAAGTGGCAGTAGAAGTCCTCATGCTCCACTACAGAGGAGTTTGAGCCAGAGTCCTGTTAGAAGTGCAAGGAGGAGTCCAAGCAGAAGCGCCAGTAGAAGCCCAATGAGAGGTAGGAAAGGTAGAAGTATCAGTAGAAGCTCTGTAAGGCATCATGGACATCAAAGTGTCAGCACAAGCCCTGTAAGACCCCTTTCTCGGAGCTACCAGAGGACTTCACCAAAAACATCATCACGAAGATCAATCAGCAGAAGCCCTACGACATCTCGAAGAAGTGTCAGTGCAAGCCCAGGAAGATCCCCTTCTCAGAGCCAAAGGAGTTTGCCCATAGCACCATCACGTCGATCAATCAGCAGAAGCCCAGTAAGAAATCACCGACTTAGAAGTGTCAGTAGAAGCCCTTTAAGATCTCAAGGTCATAGAAGTGATAGTGGAAGCCCTGTAAGATCCCTCACACCGAGTCATCGAATATCACCCAGAACAAAATCTAGGAGATCAATCAGCAGAAGCCCTGTGAGAACTCGCAACTATAAAAGTATCAACAAAGGCACCTTGAGATCTCGTGGTCGTAGAACAAGCAGTGGAAGCCCTGTAAGATCCCTTTCTCGAAGTGGCCGTAGGAGTTCACCAAGAGCACTTTCACAAAGATCAATCAGTAGAAGCCCTGTGAAAACTGGCAATCATAGAAGTGTAAGTAGAAGCCCCTTGCGATCTCATGGTCACAGGACTGTGAGTGCTAGCCCTGTTAGATCACCTTCATGGGAGCGTCAAAAAAGTTCACCTAGAGCGCCATCACGAAGATTGGTCAGTAGAAGCCCGGTAAGAGTGTCAAGAAAGAGTTTAAGCAGGAGTCCAGTTCGATCATCTGCCAGAAGCTTGAGCAGAAGCTCTGGCAGAGTCCCTTTGAGAAGCAATAGTCGGAGTCCAGTTAGAGGGCCAAGCAGAGTCCATCGTCGCAGTTATTCTAGGAGTCCTCGTGGTAGGAGTTTGTCTAGAAGTTTGTCACCTAATGTTTCCCCAAAACGTATAAGAAGGGGAAGAGGTTTTAGCGAACGATATTCTTATGCTAGAAGGTATAGGACTCCTTCTCGATCTCCTGTGAGATCATACCGCTATAATGGAAGAAGTGAACGTGACAGATATTCAGGTTACAGAAGGTACTCCCCAAGGCGTAACAGGAGCCCGCCACCACGCAGAAGAACCCCACCAAGGTTCCGGAGTAGGAGGAGCAGGACACCATCTGTTTCTCGCAGTCCACGGTACAGGGGTCGACGGTACAGTCGAAGCCGTAGCCCTGTTCGCAGTCGTTCACCTGTGGGCACGTATCGACGCCGTGTTGAGAGGAGCAGGTCTTTGTCCCGGAGTAGCAGGTCTTTGTCCCGGAGCAAGAGTCCATCAGTATCCAGGGCTTCAGTGGAATCACAATCTCCACGAAAGAACAGCAGGTCAAGGTCCCGGTCCCAAAGCTCAGAAGGAAAGAAAGGCCTTGTATCTTACGGAGACGGTTCTCCAGATTCAAGCTGA 2817 0.4544 MAKKKNSLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALCTGEMGVGPNTGKSLHYKGSFFHRIVKGSIARGGDFVNRNGTSGESIYGSKFPDESPRLKHDVPGLLSMPVADRDTLGSHFIITFKADPHLDRKHVVFGKLVLGHDILKKIEDVGDKEGLPSVTVKIINCGEHNEDEKKINKSKKGRDGSSETNSHLLHKGKHRKSSGDKRKRRKYYSSESDTSSDSETTSSESDSDSDSDMSSSSYTSSSSDDRRRKRKRSRKDKHKRGKKRDKHREKRRRKQDKRSKRRSKRESPSHTDSDSESKSNKGSDIESYGAKVNDQNHEDHSQRHAEGQSSSVVEKELPPMHPKKREKLDILKEEEFPKENGERRSNGTGVNYRSERSEVRQPDVMDDRPDKSRSQSMSVSPRRRKSKSPSISPKRRLDRSPSGSRSPHAPLQRSLSQSPVRSARRSPSRSASRSPMRGRKGRSISRSSVRHHGHQSVSTSPVRPLSRSYQRTSPKTSSRRSISRSPTTSRRSVSASPGRSPSQSQRSLPIAPSRRSISRSPVRNHRLRSVSRSPLRSQGHRSDSGSPVRSLTPSHRISPRTKSRRSISRSPVRTRNYKSINKGTLRSRGRRTSSGSPVRSLSRSGRRSSPRALSQRSISRSPVKTGNHRSVSRSPLRSHGHRTVSASPVRSPSWERQKSSPRAPSRRLVSRSPVRVSRKSLSRSPVRSSARSLSRSSGRVPLRSNSRSPVRGPSRVHRRSYSRSPRGRSLSRSLSPNVSPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRSERDRYSGYRRYSPRRNRSPPPRRRTPPRFRSRRSRTPSVSRSPRYRGRRYSRSRSPVRSRSPVGTYRRRVERSRSLSRSSRSLSRSKSPSVSRASVESQSPRKNSRSRSRSQSSEGKKGLVSYGDGSPDSS 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1789g00005 938 Gene3D - 1 183 IPR029000 -
Vium1789g00005 938 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Vium1789g00005 938 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Vium1789g00005 938 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Vium1789g00005 938 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Vium1789g00005 938 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Vium1789g00005 938 MobiDBLite consensus disorder prediction 200 214 - -
Vium1789g00005 938 MobiDBLite consensus disorder prediction 177 199 - -
Vium1789g00005 938 MobiDBLite consensus disorder prediction 436 464 - -
Vium1789g00005 938 MobiDBLite consensus disorder prediction 775 789 - -
Vium1789g00005 938 MobiDBLite consensus disorder prediction 562 588 - -
Vium1789g00005 938 MobiDBLite consensus disorder prediction 871 885 - -
Vium1789g00005 938 MobiDBLite consensus disorder prediction 177 938 - -
Vium1789g00005 938 SUPERFAMILY Cyclophilin-like 4 178 IPR029000 -
Vium1789g00005 938 MobiDBLite consensus disorder prediction 481 549 - -
Vium1789g00005 938 MobiDBLite consensus disorder prediction 603 697 - -
Vium1789g00005 938 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Vium1789g00005 938 MobiDBLite consensus disorder prediction 822 846 - -
Vium1789g00005 938 MobiDBLite consensus disorder prediction 706 742 - -
Vium1789g00005 938 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 173 IPR002130 GO:0000413|GO:0003755
Vium1789g00005 938 MobiDBLite consensus disorder prediction 224 252 - -
Vium1789g00005 938 MobiDBLite consensus disorder prediction 258 295 - -
Vium1789g00005 938 MobiDBLite consensus disorder prediction 296 312 - -
Vium1789g00005 938 MobiDBLite consensus disorder prediction 348 373 - -
Vium1789g00005 938 MobiDBLite consensus disorder prediction 322 336 - -
Vium1789g00005 938 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 182 - -
Vium1789g00005 938 MobiDBLite consensus disorder prediction 387 404 - -
Vium1789g00005 938 MobiDBLite consensus disorder prediction 886 914 - -
Vium1789g00005 938 MobiDBLite consensus disorder prediction 802 817 - -
Vium1789g00005 938 MobiDBLite consensus disorder prediction 466 480 - -
Vium1789g00005 938 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1789g00005 Vium-Chr1789 37081 44225 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1789g00005 25 170 U-box Gene Family AT5G67530 37.838 6.90e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1789g00005 K09566 - gmx:100801588 754.977