Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1788g00002 ATGAACGAAGCCCAAACTGAAATTACCATTCCTCACCTGTTCAGATGCCCCATCAGTTTGGACTTGTTCGAAGATCCAGTAACTTTGTCCACAGGCCAAACCTATGACAGATCAAGCATAGAGAAATGGTTCTCTGCTGGAAATCTCACATGCCCTGTAACAATGCAGAAGCTTCGTGATCCATCCATTGTTCCCAACTACACTCTTCGCCACTTGATCGATCAGTGGCTCCAATTGGGTCCCCAATTTGATAACTCTGCTACTATTGATTATTTAGCCGCACTGAAGCACACCCTTGAATCCCCCCAATTGGAAAACAAGCTCCAAGCACTTGAGAAAATTACAGTTCTCTCTGATGAGTATTGCTCCTTCAGAAAATCTTGTTTCCATCAACTGAGTTTCTTGCCCCTACTTTTGGAACTTGTTTTTGGCATCGAGTTCACAAACTGTCACATGAAGTTCACGGAGCTAGCACTTTCTTGCATTATAAAGTTGTTACCTCTTGTGAGTATGGAGCCTCTAAATATGATCAAAGATGAGTCTAAGTTGACAACGTTCCTGCTACTATTTGAAAAGGGAACCAGCTCCGTTAAGACTAGTCTTTGTCATCTTATAGATTCAACGGCATCACCACAAACAGAAGAGGTATGTCACATGCTTGGACACTCTCAAAAACTAGTGCGTGAAATTGTGGTACTTGTTCGTCAAGGTTGTGAGGTTTCTAAGGTTGCAATTAAGGCCATGTTAGCATTATGTTCCTTGCAATCTAACCGTGACAATTTGGTGAGGGCAGGAGCAATTGATGGGGTCATAATATACATTTCAGGTTGTGAAACAAGGCAGAAGAACTTGGCCCCATTTGCCATGGCAATAATAAAGAACCTTCTGGTGCTAGAGAGTGCTAAAGAGGCACTGGTGAATCACCCTTATGGGGTTGCAACTTTGGTGAAGATGGTTTTCAGGGTGTGTAATCAAGAGTGTAGTGAGAGTGCTGTTGGGATACTTGCAATTGTTTGCCGAGATTTTGGTCGTGCAAGAGATGAAGCAATCGGTGCTGGAGTTTTGACTCAGTTGCTGTTTCTTCTCCAGAGTCAGTGTGGCCCCAAAACTAAAACAAAAGCAAGAATGCTGCTCAAGTTGCTAAGATCAAAGTGGATTGAGGAACCAAAACAGCTGTAG 1179 0.43 MNEAQTEITIPHLFRCPISLDLFEDPVTLSTGQTYDRSSIEKWFSAGNLTCPVTMQKLRDPSIVPNYTLRHLIDQWLQLGPQFDNSATIDYLAALKHTLESPQLENKLQALEKITVLSDEYCSFRKSCFHQLSFLPLLLELVFGIEFTNCHMKFTELALSCIIKLLPLVSMEPLNMIKDESKLTTFLLLFEKGTSSVKTSLCHLIDSTASPQTEEVCHMLGHSQKLVREIVVLVRQGCEVSKVAIKAMLALCSLQSNRDNLVRAGAIDGVIIYISGCETRQKNLAPFAMAIIKNLLVLESAKEALVNHPYGVATLVKMVFRVCNQECSESAVGILAIVCRDFGRARDEAIGAGVLTQLLFLLQSQCGPKTKTKARMLLKLLRSKWIEEPKQL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1788g00002 392 CDD RING-Ubox_PUB 11 60 IPR045210 -
Vium1788g00002 392 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Vium1788g00002 392 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Vium1788g00002 392 SUPERFAMILY RING/U-box 5 78 - -
Vium1788g00002 392 PANTHER WDSAM1 PROTEIN 7 389 IPR045185 GO:0061630
Vium1788g00002 392 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Vium1788g00002 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Vium1788g00002 392 SUPERFAMILY ARM repeat 94 381 IPR016024 -
Vium1788g00002 392 Gene3D - 182 389 IPR011989 -
Vium1788g00002 392 FunFam RING-type E3 ubiquitin transferase 10 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1788g00002 Vium-Chr1788 55266 57763 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1788g00002 8 388 U-box Gene Family AT1G49780 30.049 3.32e-41 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1788g00002 - - gmx:100815247 680.248