Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1788g00001 ATGGAAGAAGCAACCAATAAATCGGATGACTACATAGTATGTTATGCACCTACCATGATAACAACAAATGGGGTGTGGCAAGGAGACAACCCTTTGGATTATTCTCTCCCTCTTTTCATCTTGCAATTGACTTTAGTTGTGATTGCCACCCGCTTATTTGTGTTCATACTCAAACCTTTTCGCCAGCCACGCGTAATTGCTGAAGTCTTGGGTGGAGTAGTATTGGGTCCTTCGGTGCTTGGACAAAACGAAACATTTGCCAATGCAGTTTTTCCTCTAAGAAGTGTTATGGTTATTGAAACAATGGCAAATATTGGTCTCCTCTATTTTCTGTTCTTGGTAGGGGTGGAAATGGACATAACAGTGATGCGAAGCGTGGGTAGAAAAGCTGTGGCTTCGGCAATGGCTGGCATGATTTTACCTTTCCTCGTTGGAGTGGCCTTCTCCTACCTTTTGGCCAAAAAAACTGATACCCATATAAACCAAGGCACATACATCCTATTCCTTGGCGTTGCTCTCTCTGTCACTGCATTTCCTGTCCTTGCTAGGATCCTGGCTGAGCTTAAACTCGTTAACACAGAGTTGGGGAAGCTTGCTCTTTCAGCTGCACTCATCAATGACGTGTGTGCTTGGGTTCTGTTAGCTTTGGCCATTGCACTAGCTGAGAACAATGCAGCTTCGTTGGCTTCTCTCTGGGTTCTACTCTCTGGTGCTGCATTTGTGGCCTTTTGTATTTTTGCTGTTCGACCAGCAGTTGAATGGCTGATTAGGAAAACCCCTGAAGGAGAAACTTTCAGTGAGTTTTATATATCTCTTATTCTAGCTGGGGTCATGGTCTCAGGCTTCATCACTGATGCAATTGGAACTCATTCTGTTTTTGGAGCTTTTGTGTTTGGTTTGGTAATCCCAAATGGACCACTCAGTTTTACTCTTGTGGAAAAGCTTGAGGACTTTGTTTCCGGACTTCTGCTACCTCTCTTTTTTGCCATAAGTGGGCTAAAAACCAACCTAGCACTCATTAATGGCTCATACACCTGGGCGATTCTTATTCTAGTCATTTTTCTGGCCTGCATTGGCAAAGTTCTTGGCACCCTATTGATTGCACTGCTTTATCAAATGCCAATACGTGAAGGAGCTGCCCTTGGTTTACTCATGAACACAAAAGGTCTCGTTGAAATGGTCGTGCTTAATGTTGGGAAGGACCAGAAGGTTTTTGATGAAGAATCATTTGCAGTTATGGTCGTTATAACAGTAATAATGACTGCCATTATTGTACCTGCCATATCAATCATTTATAGGCCCTCAAGAAGCAGCATATATTACAAAAGAAGAACAATTGAGATATCAAAATCAAATACTGAGTTCAGACTCCTAGTGTGCATCCATACCCCTCGAAACGTTCCAACAATGATAAACCTTCTTGAAGCCTCTAACCCATCAAAGAACTCCCCAATATGTGCCTATGTGCTCCATCTGGTGGAACTCAGTGGTCGAACATCAGCCATGCTCATTGTTCACAACACAGCAAAACAAGACCTCCCTGCCCTTAACAGAACCGAAGCTCAATCTGACCACATAATCAAAGCCTTTGAAAACTACGAGCAGCATGCTTCATTCATCGCAGTTCAGCCCTTGACAGCCATCTCTCCCTATTCCACCATGCATGAAGACATATGCAATTTGGCAGCAGACAAACGTGTGGCCCTCATCATTGTTCCTTTTCATAAACAACAAACAGTCGATGGTGGCATGGAAGCTACAAACATGGCCTATAGAGCCATCAACCAGAATGTACTAGCAAATGCACCTTGCTCAGTAGGAATTCTAGTAGATAGAGGCTTAAGTGGCTCTAATCGTTTGGCTGGAAATCAAGTATCTCATCACATAGCAGTATTGTTTTTCGGAGGCCCAGATGATAGAGAGGCTTTGTGCTATGGATGGAGAATGATGGAACATCCAGGGATTAGCTTCACCATAATGCGTTTTCTCCCAGGTGAACAGGCAGAGCCGTCCTGCCCACAACAAGACAGCAATAATATGGATGGACCAAGGATGCTGACAGTGCAAACAGATAGGGATATACAGAAGAAACTTGATGAAAAACTTCTAGAAGAATTTAGGATGTCATGTGGGAGTGAAGATGCAGTTGATTATGTTGAGAAGGTAGTTAACAATGGGGAAGACACAGTGGCTGCAATAAGGAGCATGGATGATGTTCATGATCTTTTCGTTGTAGGGAGAGGTCAAGGGATGATATCACCTCTCACTGCAGGACTCACTGATTGGAGTGAATGTCCTGAAATGGGGGCCATTGGAGATTTGCTAGCATCTTCAGATTTTGCTGCCACTGCTTCAGTTTTGGTGGTGCAACAATATGTTGGGCAAGTATATCCAGGAACGGAAACACCTAATGGTGATGATTATATCGATTTTAGCCATTGTTCTACATCACCTGCAGCTAAAGTATACAGTTAG 2475 0.4339 MEEATNKSDDYIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTLVVIATRLFVFILKPFRQPRVIAEVLGGVVLGPSVLGQNETFANAVFPLRSVMVIETMANIGLLYFLFLVGVEMDITVMRSVGRKAVASAMAGMILPFLVGVAFSYLLAKKTDTHINQGTYILFLGVALSVTAFPVLARILAELKLVNTELGKLALSAALINDVCAWVLLALAIALAENNAASLASLWVLLSGAAFVAFCIFAVRPAVEWLIRKTPEGETFSEFYISLILAGVMVSGFITDAIGTHSVFGAFVFGLVIPNGPLSFTLVEKLEDFVSGLLLPLFFAISGLKTNLALINGSYTWAILILVIFLACIGKVLGTLLIALLYQMPIREGAALGLLMNTKGLVEMVVLNVGKDQKVFDEESFAVMVVITVIMTAIIVPAISIIYRPSRSSIYYKRRTIEISKSNTEFRLLVCIHTPRNVPTMINLLEASNPSKNSPICAYVLHLVELSGRTSAMLIVHNTAKQDLPALNRTEAQSDHIIKAFENYEQHASFIAVQPLTAISPYSTMHEDICNLAADKRVALIIVPFHKQQTVDGGMEATNMAYRAINQNVLANAPCSVGILVDRGLSGSNRLAGNQVSHHIAVLFFGGPDDREALCYGWRMMEHPGISFTIMRFLPGEQAEPSCPQQDSNNMDGPRMLTVQTDRDIQKKLDEKLLEEFRMSCGSEDAVDYVEKVVNNGEDTVAAIRSMDDVHDLFVVGRGQGMISPLTAGLTDWSECPEMGAIGDLLASSDFAATASVLVVQQYVGQVYPGTETPNGDDYIDFSHCSTSPAAKVYS 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1788g00001 824 Pfam Sodium/hydrogen exchanger family 46 424 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vium1788g00001 824 PANTHER CATION/H + ANTIPORTER 13 793 - -
Vium1788g00001 824 Gene3D - 38 438 IPR038770 -
Vium1788g00001 824 FunFam Cation/H(+) antiporter 15 38 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1788g00001 Vium-Chr1788 5757 8731 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1788g00001 8 794 Antiporter Super Family AT2G13620 69.835 0.0 1131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1788g00001 K26731 - gmx:100818927 1335.47