Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1786g00016 ATGATGGGTCTTCATCAGGATCCCACCGACTCAGGCCTTCAGCTTATTCTAGGATTAGCTTTGACATCCACCCCAGAAGATATCATCACTCCATCACCACCATCCATTCTTCATCATCACCATCTTACCACTCACAGGCCAAACTCCTATTCCTCTAAATCCTCTTTCATCTCTCCATCTAACTCAGAGCCTGAGCCTTCACTCACGTTGGGCCTCTCCCGCGAAACTTATCCGCAGCAGGTGGTGAAACTCCCCAGAAACATACCACACAACAAACTCTCCTCTGAGGACCCTCTTGAACAGACATCACCTCACAGTGCTATTTCCTCCTTCTCCAGTGGAAGGGTCAAGAGGGAGAGGGATCTCAGCTGTGAAGAGGTGGATGCAACAGAGACGGAGAGGGTTTCATCAAGAGCCAGCGACGAAGAAGAAGACGGCACCACCGCCAGGAAGAAACTTAGGCTTACTAAAGAACAGTCCGCTTTGCTTGAAGAAAGCTTCAAACAACACAGCACCCTCAATCCTAAACAGAAGCAAGCTTTGGCCAAGCAGTTAAGTCTTCGGCCTCGACAAGTCGAAGTGTGGTTCCAGAACCGGAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGCGAGTTCCTAAAAAAGTGTTGTGAAACATTAACAGACGAGAACAGAAGGTTACAGAAGGAGCTGCAAGAGCTGAAGGCACTGAAACTGGCTCAGCCCTTGTACATGCCTATGTCTGCGGCAACCCTCACCATGTGTCCCTCGTGTGAGAGGCTCGGCGGCGGGGTAGGCGGCGGCGCTTCCACTAAGTCACCCTTCTCCATGGCTCCTAAACCTCACTTCTTCAACCCCTTCGCCAATCCTTCTGCAGCATGTTGA 891 0.5095 MMGLHQDPTDSGLQLILGLALTSTPEDIITPSPPSILHHHHLTTHRPNSYSSKSSFISPSNSEPEPSLTLGLSRETYPQQVVKLPRNIPHNKLSSEDPLEQTSPHSAISSFSSGRVKRERDLSCEEVDATETERVSSRASDEEEDGTTARKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAQPLYMPMSAATLTMCPSCERLGGGVGGGASTKSPFSMAPKPHFFNPFANPSAAC 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1786g00016 296 MobiDBLite consensus disorder prediction 86 152 - -
Vium1786g00016 296 Gene3D - 154 204 - -
Vium1786g00016 296 SMART halz 206 249 IPR003106 GO:0006355|GO:0043565
Vium1786g00016 296 CDD homeodomain 150 207 IPR001356 GO:0003677
Vium1786g00016 296 Pfam Homeobox associated leucine zipper 206 240 IPR003106 GO:0006355|GO:0043565
Vium1786g00016 296 SUPERFAMILY Homeodomain-like 140 207 IPR009057 -
Vium1786g00016 296 MobiDBLite consensus disorder prediction 40 70 - -
Vium1786g00016 296 Pfam Homeodomain 150 204 IPR001356 GO:0003677
Vium1786g00016 296 ProSitePatterns 'Homeobox' domain signature. 181 204 IPR017970 GO:0000981|GO:0006355
Vium1786g00016 296 MobiDBLite consensus disorder prediction 94 113 - -
Vium1786g00016 296 Coils Coil 212 242 - -
Vium1786g00016 296 SMART HOX_1 148 210 IPR001356 GO:0003677
Vium1786g00016 296 MobiDBLite consensus disorder prediction 47 70 - -
Vium1786g00016 296 MobiDBLite consensus disorder prediction 114 152 - -
Vium1786g00016 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 54 271 - -
Vium1786g00016 296 ProSiteProfiles 'Homeobox' domain profile. 146 206 IPR001356 GO:0003677
Vium1786g00016 296 FunFam Homeobox-leucine zipper protein 18 131 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1786g00016 Vium-Chr1786 254900 256213 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1786g00016 2 296 Homeobox Transcription Factor Family AT4G37790 57.792 2.47e-93 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium1786g00016 Homeodomain 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1786g00016 K09338 - gmx:100807123 384.415