Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1786g00012 ATGGGGAGAGCTCCTTGCTGTGACAAAGCCAACGTGAAGAGAGGTCCATGGTCGCCTGAAGAAGACGCCAAACTCAAATCTTACATCGAAGAGCACGGCACCGGTGGCAACTGGATAGCCTTGCCCCAGAAAATAGGTATGAAAAGGTGCGGCAAAAGTTGTCGTCTCAGATGGCTGAACTATCTTCGCCCAAACATCAAACACGGGGGTTTCTCAGAAGAAGAAGACAACATAATTTGCAGCCTCTATGTTAACATTGGAAGCAGGTGGTCAATTATAGCAGCGCAGTTACCAGGGCGCACGGATAATGACATAAAGAACTATTGGAACACCAAGCTGAAGAAGAAGCTACTGGGGAAGCAAAGGAAGGAGCATCACGCTGAAGCTCGAAGAGTTGGTGGCCCAAAGCAAGAGATCAAAAGAGAGAGTGAAGATTTGATGTTACCTGTGGGAGTTATTAGCCGAACTCCTCATTGGCCACACGAACAGAATTCTTGGCCCATTCCAGTGGCAAATGCTTACTGTGATCTCAACAACCAAACATCACCGATCGTACACATCCCTGACACCACAGTCACTGCCACCGTGAACTCACAATACTCATCATTTGACATTTCCTTAACACAAGACCAGCTATATCCCTCCACAGTGAACACGATCACAACGGACACGTGTCACACATCAAATGTGTTTCAAGGGTTTGGGAACTTCTCCAGTGATTTGGCCTGCGTGGACCCGCAGCATATAGATGGATCATCAGAACGGCTTTTTTATGGAATGGAATCAATGGAAATCGGCAATGGCAGCACAAACACGACTTCAACAGAAAGCACTAGTTGGGGAGATATAAGCTCTTTGGTTTACCCGCCTTTGGTTTCTCACTACGAATCTTGCCAACAGAGAATACTGCCTCAAGAAGTTACTTTCGACGGGTCTAGTTACTTCGCAATGCAAACGCAATAA 963 0.4663 MGRAPCCDKANVKRGPWSPEEDAKLKSYIEEHGTGGNWIALPQKIGMKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGKQRKEHHAEARRVGGPKQEIKRESEDLMLPVGVISRTPHWPHEQNSWPIPVANAYCDLNNQTSPIVHIPDTTVTATVNSQYSSFDISLTQDQLYPSTVNTITTDTCHTSNVFQGFGNFSSDLACVDPQHIDGSSERLFYGMESMEIGNGSTNTTSTESTSWGDISSLVYPPLVSHYESCQQRILPQEVTFDGSSYFAMQTQ 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1786g00012 320 SMART sant 13 64 IPR001005 -
Vium1786g00012 320 SMART sant 67 115 IPR001005 -
Vium1786g00012 320 MobiDBLite consensus disorder prediction 120 140 - -
Vium1786g00012 320 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vium1786g00012 320 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vium1786g00012 320 CDD SANT 71 111 IPR001005 -
Vium1786g00012 320 Gene3D - 7 68 - -
Vium1786g00012 320 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vium1786g00012 320 FunFam Transcription factor RAX3 7 68 - -
Vium1786g00012 320 Gene3D - 70 142 - -
Vium1786g00012 320 CDD SANT 16 62 IPR001005 -
Vium1786g00012 320 FunFam Transcription factor RAX3 70 145 - -
Vium1786g00012 320 PANTHER OS09G0431300 PROTEIN 1 263 - -
Vium1786g00012 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vium1786g00012 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vium1786g00012 320 MobiDBLite consensus disorder prediction 122 140 - -
Vium1786g00012 320 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vium1786g00012 320 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1786g00012 Vium-Chr1786 205936 207444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1786g00012 1 288 MYB Transcription Factor Family AT3G49690 50.000 4.01e-91 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium1786g00012 Myb_DNA-binding 1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1786g00012 K09422 - gmx:100791406 478.789