Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1786g00008 ATGAAGAGCATGGAAAATGATGACTCTGTTGACCTTAATAATCAAAATAACTGGTTGGGTTTCTCACTCTCTCCTCAAATGAACGTAGGTGTTGCTTCACACCCCCAACCTTCCTCTGCTGCTGATGTGGTTCCTACAAGTTTTTACCACACTGCACCACTTAATAACTACGGCTTCTACTATGGACTTGAAGCTGAAAATGTTGGATTGTATTCAGCTTTGCCTATCATGCCCCTCAAATCTGATGGCTCTCTCTATGGAATGGAAGCTCTGAGCAGGTCACAAACACAAGCAATGGCTACCACATCAACTCCAAAACTGGAGAATTTCTTAGGTGGGGAAGCGATGGGGACCCCTCACTATGAATGTAGTGTCACAGAAACAATTCCTCTGAGCCTAGACAGTGTGTTTTACAACCAATCCTCACGCCGTGACCCAAATAACCAAACTTACCAAAACCATGTCCAACACATTACCACTCAACAACAACATCAGCAAGACCTTCAAGCCCAACACTTATCATATTACTCTACCTTGAGAAACCATGATATGATGTTAGAAGGGTCGAAGCAAAGTCAAACCTCAGACAGCAATCTTCAGCTTCCAAACATGGGTGATGATGGAGTTCCTGCTCCTGGTCTTAAGAGTTGGGGAGTAAGGAACTTCCAAACTAGCCATGCACAGGACTCAAAGTTGATTGTTCCTGTAGAGGAAAATGGAGGTGAATCAGGGTCCATTGGATCAATGGCTTATGGGGATTTGCAGTCTTTAAGCTTGTCCATGAGTCCTAGCTCACAATCCAGTTGTGTGACTAGTTCGCACCGCACGTCACCTGCTGTCATTGATTCTGTTGCCATGGATACAAAGAAAAGGGGACCTGAAAAGGTTGACCAGAAGCAAATAATTCATAGGAAGTCGATTGACACCTTTGGACAAAGAACCTCTCAATATAGAGGTGTGACAAGGCATAGGTGGACTGGTAGGTATGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAAGCAGGAAAGGAAGACAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTGGCCGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACGAGACAGGAGTATGTTGCTCATTTAAGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCAATGTACAGAGGAGTAACAAGACACCACCAACATGGAAGGTGGCAAGCACGAATTGGTAGAGTTGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGTACACAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCTATAAAATTCAGAGGAGTGAATGCTGTAACCAACTTTGACATAACAAGATATGACGTGGAGAAAATCATGGCAAGCAGCAACCTTCTTAGCAGTGAGCTAGCTAGGCGCAACCGAGAGACAGACAGTGGAACTCAGTATATTGATCATAATCATAAGTCTTCTGCGTATGATGATACTCAAGAAGCTATTCTAATGCAGAAGAGCTGTGAAAGTCAAAATGAACAGTGGAAGATGGCTCCCTATCAATCCTCTCAACAACTTGACCAGAATCCACCTAGAACTGAGAGTGACAGAACTAACCAATCCTTCTCAGTGGCTTTGGACAACATGTTTCATCAAGAAGTAGAGGAATCAAGAAAGGTGAGAACGCATGTGTCAAATCCTTCTTCACTGGCCACAAGTTTGAATAGCTCAAGAGAAGGTAGCCCTGATAGGACAAGCTTGCCAATGCTCTCTGGAATGCCTTCCACTGCGTCAAAATTATTGTCTACCAATCCAAACAACGTGAATTCTTGGGATCCTTCACCCCATTTGAGGCCTGCCCTTTCTTTGCCTCAGATGCCAGTTTTTGCTGCTTGGACAGATGCATAG 1980 0.4389 MKSMENDDSVDLNNQNNWLGFSLSPQMNVGVASHPQPSSAADVVPTSFYHTAPLNNYGFYYGLEAENVGLYSALPIMPLKSDGSLYGMEALSRSQTQAMATTSTPKLENFLGGEAMGTPHYECSVTETIPLSLDSVFYNQSSRRDPNNQTYQNHVQHITTQQQHQQDLQAQHLSYYSTLRNHDMMLEGSKQSQTSDSNLQLPNMGDDGVPAPGLKSWGVRNFQTSHAQDSKLIVPVEENGGESGSIGSMAYGDLQSLSLSMSPSSQSSCVTSSHRTSPAVIDSVAMDTKKRGPEKVDQKQIIHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASSNLLSSELARRNRETDSGTQYIDHNHKSSAYDDTQEAILMQKSCESQNEQWKMAPYQSSQQLDQNPPRTESDRTNQSFSVALDNMFHQEVEESRKVRTHVSNPSSLATSLNSSREGSPDRTSLPMLSGMPSTASKLLSTNPNNVNSWDPSPHLRPALSLPQMPVFAAWTDA 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1786g00008 659 CDD AP2 417 478 IPR001471 GO:0003700|GO:0006355
Vium1786g00008 659 ProSiteProfiles AP2/ERF domain profile. 418 476 IPR001471 GO:0003700|GO:0006355
Vium1786g00008 659 MobiDBLite consensus disorder prediction 542 562 - -
Vium1786g00008 659 Coils Coil 383 403 - -
Vium1786g00008 659 CDD AP2 315 382 IPR001471 GO:0003700|GO:0006355
Vium1786g00008 659 SMART rav1_2 418 482 IPR001471 GO:0003700|GO:0006355
Vium1786g00008 659 SMART rav1_2 316 388 IPR001471 GO:0003700|GO:0006355
Vium1786g00008 659 FunFam AP2-like ethylene-responsive transcription factor ANT 315 384 - -
Vium1786g00008 659 FunFam AP2-like ethylene-responsive transcription factor 417 478 - -
Vium1786g00008 659 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 104 555 - -
Vium1786g00008 659 SUPERFAMILY DNA-binding domain 315 384 IPR016177 GO:0003677
Vium1786g00008 659 MobiDBLite consensus disorder prediction 587 611 - -
Vium1786g00008 659 Pfam AP2 domain 419 468 IPR001471 GO:0003700|GO:0006355
Vium1786g00008 659 Pfam AP2 domain 316 374 IPR001471 GO:0003700|GO:0006355
Vium1786g00008 659 Gene3D AP2/ERF domain 418 478 IPR036955 GO:0003700|GO:0006355
Vium1786g00008 659 Gene3D AP2/ERF domain 315 384 IPR036955 GO:0003700|GO:0006355
Vium1786g00008 659 SUPERFAMILY DNA-binding domain 417 477 IPR016177 GO:0003677
Vium1786g00008 659 ProSiteProfiles AP2/ERF domain profile. 316 382 IPR001471 GO:0003700|GO:0006355
Vium1786g00008 659 MobiDBLite consensus disorder prediction 579 611 - -
Vium1786g00008 659 PRINTS Ethylene responsive element binding protein signature 317 328 IPR001471 GO:0003700|GO:0006355
Vium1786g00008 659 PRINTS Ethylene responsive element binding protein signature 458 478 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1786g00008 Vium-Chr1786 113538 117573 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1786g00008 399 659 AP2-EREBP Transcription Factor Family AT4G37750 27.090 3.09e-16 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium1786g00008 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1786g00008 K09285 - gmx:100787611 1105.51