Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1786g00007 ATGAAGAGCATGGAAAATGATGACTCTGTTGACCTTAATAATCAAAATAACTGGTTGGGTTTCTCACTCTCTCCTCAAATGAACGTAGGTGTTGCTTCACACCCCCAACCTTCCTCTGCTGCTGATGTGGTTCCTACAAGTTTTTACCACACTGCACCACTTAATAACTACGGCTTCTACTATGGACTTGAAGCTGAAAATGTTGGATTGTATTCAGCTTTGCCTATCATGCCCCTCAAATCTGATGGCTCTCTCTATGGAATGGAAGCTCTGAGCAGGTCACAAACACAAGCAATGGCTACCACATCAACTCCAAAACTGGAGAATTTCTTAGGTGGGGAAGCGATGGGGACCCCTCACTATGAATGTAGTGTCACAGAAACAATTCCTCTGAGCCTAGACAGTGTGTTTTACAACCAATCCTCACGCCGTGACCCAAATAACCAAACTTACCAAAACCATGTCCAACACATTACCACTCAACAACAACATCAGCAAGACCTTCAAGCCCAACACTTATCATATTACTCTACCTTGAGAAACCATGATATGATGTTAGAAGGGTCGAAGCAAAGTCAAACCTCAGACAGCAATCTTCAGCTTCCAAACATGGGTGATGATGGAGTTCCTGCTCCTGGTCTTAAGAGTTGGGGAGTAAGGAACTTCCAAACTAGCCATGCACAGGACTCAAAGTTGATTGTTCCTGTAGAGGAAAATGGAGGTGAATCAGGGTCCATTGGATCAATGGCTTATGGGGATTTGCAGTCTTTAAGCTTGTCCATGAGTCCTAGCTCACAATCCAGTTGTGTGACTAGTTCGCACCGCACGTCACCTGCTGTCATTGATTCTGTTGCCATGGATACAAAGAAAAGGGGACCTGAAAAGGTTGACCAGAAGCAAATAATTCATAGGAAGTCGATTGACACCTTTGGACAAAGAACCTCTCAATATAGAGGTGTGACAAGGCATAGGTGGACTGGTAGGTATGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAAGCAGGAAAGGAAGACAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTGGCCGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACGAGACAGGAGTATGTTGCTCATTTAAGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCAATGTACAGAGGAGTAACAAGCAGACACCACCAACATGGAAGGTGGCAAGCACGAATTGGTAGAGTTGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGTACACAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCTATAAAATTCAGAGGAGTGAATGCTGTAACCAACTTTGACATAACAAGATATGACGTGGAGAAAATCATGGCAAGCAGCAACCTTCTTAGCAGTGAGCTAGCTAGGCGCAACCGAGAGACAGACAGTGGAACTCAGTATATTGATCATAATCATAAGTCTTCTGCGTATGATGATACTCAAGAAGCTATTCTAATGCAGAAGAGCTGTGAAAGTCAAAATGAACAGTGGAAGATGGCTCCCTATCAATCCTCTCAACAACTTGACCAGAATCCACCTAGAACTGAGAGTGACAGAACTAACCAATCCTTCTCAGTGGCTTTGGACAACATGTTTCATCAAGAAGTAGAGGAATCAAGAAAGGTGAGAACGCATGTGTCAAATCCTTCTTCACTGGCCACAAGTTTGAATAGCTCAAGAGAAGGTAGCCCTGATAGGACAAGCTTGCCAATGCTCTCTGGAATGCCTTCCACTGCGTCAAAATTATTGTCTACCAATCCAAACAACGTGAATTCTTGGGATCCTTCACCCCATTTGAGGCCTGCCCTTTCTTTGCCTCAGATGCCAGTTTTTGCTGCTTGGACAGATGCATAG 1983 0.4392 MKSMENDDSVDLNNQNNWLGFSLSPQMNVGVASHPQPSSAADVVPTSFYHTAPLNNYGFYYGLEAENVGLYSALPIMPLKSDGSLYGMEALSRSQTQAMATTSTPKLENFLGGEAMGTPHYECSVTETIPLSLDSVFYNQSSRRDPNNQTYQNHVQHITTQQQHQQDLQAQHLSYYSTLRNHDMMLEGSKQSQTSDSNLQLPNMGDDGVPAPGLKSWGVRNFQTSHAQDSKLIVPVEENGGESGSIGSMAYGDLQSLSLSMSPSSQSSCVTSSHRTSPAVIDSVAMDTKKRGPEKVDQKQIIHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASSNLLSSELARRNRETDSGTQYIDHNHKSSAYDDTQEAILMQKSCESQNEQWKMAPYQSSQQLDQNPPRTESDRTNQSFSVALDNMFHQEVEESRKVRTHVSNPSSLATSLNSSREGSPDRTSLPMLSGMPSTASKLLSTNPNNVNSWDPSPHLRPALSLPQMPVFAAWTDA 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1786g00007 660 Pfam AP2 domain 316 374 IPR001471 GO:0003700|GO:0006355
Vium1786g00007 660 Pfam AP2 domain 419 469 IPR001471 GO:0003700|GO:0006355
Vium1786g00007 660 SUPERFAMILY DNA-binding domain 417 478 IPR016177 GO:0003677
Vium1786g00007 660 Coils Coil 383 403 - -
Vium1786g00007 660 CDD AP2 315 382 IPR001471 GO:0003700|GO:0006355
Vium1786g00007 660 FunFam AP2-like ethylene-responsive transcription factor 417 479 - -
Vium1786g00007 660 MobiDBLite consensus disorder prediction 588 612 - -
Vium1786g00007 660 ProSiteProfiles AP2/ERF domain profile. 418 477 IPR001471 GO:0003700|GO:0006355
Vium1786g00007 660 FunFam AP2-like ethylene-responsive transcription factor ANT 315 384 - -
Vium1786g00007 660 Gene3D AP2/ERF domain 418 479 IPR036955 GO:0003700|GO:0006355
Vium1786g00007 660 Gene3D AP2/ERF domain 315 384 IPR036955 GO:0003700|GO:0006355
Vium1786g00007 660 PRINTS Ethylene responsive element binding protein signature 317 328 IPR001471 GO:0003700|GO:0006355
Vium1786g00007 660 PRINTS Ethylene responsive element binding protein signature 459 479 IPR001471 GO:0003700|GO:0006355
Vium1786g00007 660 SUPERFAMILY DNA-binding domain 315 384 IPR016177 GO:0003677
Vium1786g00007 660 MobiDBLite consensus disorder prediction 580 612 - -
Vium1786g00007 660 CDD AP2 417 479 IPR001471 GO:0003700|GO:0006355
Vium1786g00007 660 MobiDBLite consensus disorder prediction 543 563 - -
Vium1786g00007 660 ProSiteProfiles AP2/ERF domain profile. 316 382 IPR001471 GO:0003700|GO:0006355
Vium1786g00007 660 SMART rav1_2 418 483 IPR001471 GO:0003700|GO:0006355
Vium1786g00007 660 SMART rav1_2 316 388 IPR001471 GO:0003700|GO:0006355
Vium1786g00007 660 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 103 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1786g00007 Vium-Chr1786 113536 117573 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1786g00007 399 660 AP2-EREBP Transcription Factor Family AT4G37750 27.000 7.25e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium1786g00007 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1786g00007 K09285 - gmx:100787611 1105.51