Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1786g00003 ATGCTCACCACCCTCCCTCCCTCCGAACCCTTCTTGGGCAACCCATTCTCCGCCTTTTCTGTAGACTTCACCGCCTGGGAGGACGACTCCCACCACCTCCTCTCCCCGAAACCCGTCACTTCCAGCTCCGGCTCCGACAAACCGGAGCCGGAGCCAGCCGAACCGGACCAACCCGTGGTCTCGGTGGTGGACGAGCGGAAACTTCGGCGCATGATATCGAACCGCGAATCTGCCCGCAGGTCTCGCATGCGAAAACAGAGACACCTGGAGAACCTTCGGAACCAGTTGAACAAGTGCAGGGTCGAAAACCGGGAACTGAATAACCGGTTGCAGTTCGTCTTGCACCACTTTAACCGCCTCCGAACCGAAAACGAATGGCTCCGGTCCCAGCGAACCCTCCTCCTCCAAAAAGTCGCCAACTTAACCCAAATTTTGATTTTCCAACAATTCCAACAACCCATCTCCCCTGCATGGACATGCAACACTTCGCTCATCCCAATTAATCAAGTTAATTAA 516 0.5523 MLTTLPPSEPFLGNPFSAFSVDFTAWEDDSHHLLSPKPVTSSSGSDKPEPEPAEPDQPVVSVVDERKLRRMISNRESARRSRMRKQRHLENLRNQLNKCRVENRELNNRLQFVLHHFNRLRTENEWLRSQRTLLLQKVANLTQILIFQQFQQPISPAWTCNTSLIPINQVN 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1786g00003 171 SMART brlzneu 62 126 IPR004827 GO:0003700|GO:0006355
Vium1786g00003 171 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 64 127 IPR004827 GO:0003700|GO:0006355
Vium1786g00003 171 PANTHER BZIP TRANSCRIPTION FACTOR 44 40 148 - -
Vium1786g00003 171 Pfam bZIP transcription factor 66 124 IPR004827 GO:0003700|GO:0006355
Vium1786g00003 171 MobiDBLite consensus disorder prediction 32 60 - -
Vium1786g00003 171 SUPERFAMILY Leucine zipper domain 66 117 IPR046347 GO:0003700|GO:0006355
Vium1786g00003 171 CDD bZIP_plant_GBF1 67 118 IPR045314 GO:0003700|GO:0006355
Vium1786g00003 171 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 69 84 IPR004827 GO:0003700|GO:0006355
Vium1786g00003 171 Coils Coil 75 109 - -
Vium1786g00003 171 Gene3D - 64 116 - -
Vium1786g00003 171 FunFam BZIP transcription factor 64 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1786g00003 Vium-Chr1786 50920 52080 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1786g00003 1 149 bZIP Transcription Factor Family AT3G49760 39.623 6.32e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium1786g00003 bZIP_1 1.7e-06 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1786g00003 - - gmx:100809244 218.779