Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1780g00006 ATGTTTCTGCTTTTCACTGCTTGCATGTTATTATTGCATGCAACAACTGTCACATGCACAACCTACCACGACACCATTCCCAAAATGCTGCCTTCCACAAACTCGTCCAGGTGGATCGGACCCACCGGACACCGAGTTATCACCGTCGACATTAACGGCGGAGGCCATTTCCGATCAGTCCAAGCCGCCGTCAATGCTGTCCCGGACAACAACACAATGAACATTCATATTCAGATAAGCCCCGGATATTACATAGAGAAGGTGGTAGTGCCCGTGACGAAGCCGTACATTAGATTCGAAGGAGCGGGGAGAGATGTGACGGTGATAGAATGGCATGACAGGGCGAGTGACCCTGGTCCCAACGGCCAACAATTGCGTACTTACAGAACAGCTTCTGTTACAGTTTTTGCCAACTATTTCTCTGCTAGGAATATCAGCTTCAAGAACACTTCTCCGGCGCCGATGCCGGGAATGGAGGGGTGGCAAGCGGCGGCGTTTCGCATTTCCGGGGACAAAGCCTATTTCTCCGGCTGCGGGTTCTACGGTGCACAAGACACTCTCTGCGACGATGCTGGCCGTCATTACTTCAAAGAATGTTACATCGAGGGTTCCATCGATTTCATTTTTGGAAATGGCAGGTCCATGTACAAGGATTGCAGGCTACACTCAATTGCCACGAGATTTGGGTCAATAGCAGCCCAAGATAGGAAATCCCCATACGAGAAAACAGGCTTCGCATTCGTACGGTGCAAAGTGACAGGAACAGGCCCAATTTATGTGGGCCGTGCAATGGGCCAGTACTCTAGGATTGTCTATGCCTACACCTACTTCGACAACATAGTTGCACATGGTGGTTGGGATGATTGGAACACTTCCTACAATAACAAGACTGTGTTCTTTGGAGTGTACAAATGCTGGGGACCAGGTGCTGCGGCTATACGTGGAGTCCCATTAGCCAAAGAGCTAGATTTTGAATCTGCCCACCCATTCCTGGTCAAGAGTTTTGTTAATGGGAAACACTGGATGGCACCCTCTGATGCTTAG 1044 0.4971 MFLLFTACMLLLHATTVTCTTYHDTIPKMLPSTNSSRWIGPTGHRVITVDINGGGHFRSVQAAVNAVPDNNTMNIHIQISPGYYIEKVVVPVTKPYIRFEGAGRDVTVIEWHDRASDPGPNGQQLRTYRTASVTVFANYFSARNISFKNTSPAPMPGMEGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCRLHSIATRFGSIAAQDRKSPYEKTGFAFVRCKVTGTGPIYVGRAMGQYSRIVYAYTYFDNIVAHGGWDDWNTSYNNKTVFFGVYKCWGPGAAAIRGVPLAKELDFESAHPFLVKSFVNGKHWMAPSDA 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1780g00006 347 Pfam Pectinesterase 47 338 IPR000070 GO:0030599|GO:0042545
Vium1780g00006 347 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 42 342 - -
Vium1780g00006 347 Gene3D - 42 346 IPR012334 -
Vium1780g00006 347 SUPERFAMILY Pectin lyase-like 43 344 IPR011050 -
Vium1780g00006 347 FunFam Pectinesterase 42 344 - -
Vium1780g00006 347 ProSitePatterns Pectinesterase signature 2. 201 210 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1780g00006 Vium-Chr1780 70171 74197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1780g00006 2 347 Carbohydrate Esterase AT5G47500 71.470 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1780g00006 - - gmx:100796327 655.981