Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1778g00001 ATGATGATGGATCAGCGACAGCGAGAGAAACTGCTTCGCAAAACCGAGGCCTGTGCCTTCGTGGCAGGTGTTGCTGCCGACCTTCGACTTGTCGCCGCCCCAGGAGACATCCCCAACACCAACAACGTTAACAGCATCACCAACACCACCAGCACCAGCAGCAACGTATCTAAATCTCACGGGTCGGGTCGGATCCATGACGCCAACCACCTTGGTCTCGTCGCTGCGGTTACCAACCTTGGAACTGTTCACAGGAAGAAGAGATTGCCCAGGCAGCGAAGATCCACCGTCACCACCACCCCCACCTTGTTTCTCCAGATGCACCACTCCGACAACACTCTCCCCTCTAAGCAGCACGACCCTAATTTTCCATCTTCAACTCCTTCCGCCTCCTCCTCTCTCCAGTCCGTTAAACCCTCCACTCCTCTCCGGCTCGCCGCACGTGAAATCGATCATAGAAACTTGAGGTTCCTTTTCAAAAAGGAGTTAAAGAACAGTGATGTTAGCTCCCTAAGGAGAATGGTATTGCCGAAGAAAGCAGCAGAGACTTTTCTTCCACCGCTGGATTCAAAAGAAGGAATTTTGCTCAAAATGGATGACAAAGATGGTACTCATGCATGGAGTTTCAAGTACAGGTTTTGGCCTAACAACAATAGTAGGATGTACGTACTTGAAAATACCGGAGATTTTGTCAGCACACACGGCCTTCGATTTGGCGATACCATTATGATTTACCAACATATTGAAAACAATAACTATGTTATTCAGGCTAAAAAAGCTTCTGAAGAAGATGAATTTGTGGAACAAAGTAGTGAGACTATGAACGACATGTTCCCGAGTGACTTGGAGGTGAACAAACCAGGTTGTTTCAACATAAACTATCCTGCAGTGAATGATGCTGGCATGTCGTTCATATATGAGACTACTTTCTCAAATGACTCCCCACTTGACTTTTTGGGAGGATCAATGACGAACTTTTCAAGGATTGGACCAGCTGATGAAACCTTTGGTTCTGTTGAAAATTTGTCCCTTGATGACTTCTATTAA 1047 0.4661 MMMDQRQREKLLRKTEACAFVAGVAADLRLVAAPGDIPNTNNVNSITNTTSTSSNVSKSHGSGRIHDANHLGLVAAVTNLGTVHRKKRLPRQRRSTVTTTPTLFLQMHHSDNTLPSKQHDPNFPSSTPSASSSLQSVKPSTPLRLAAREIDHRNLRFLFKKELKNSDVSSLRRMVLPKKAAETFLPPLDSKEGILLKMDDKDGTHAWSFKYRFWPNNNSRMYVLENTGDFVSTHGLRFGDTIMIYQHIENNNYVIQAKKASEEDEFVEQSSETMNDMFPSDLEVNKPGCFNINYPAVNDAGMSFIYETTFSNDSPLDFLGGSMTNFSRIGPADETFGSVENLSLDDFY 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1778g00001 348 CDD B3_DNA 157 259 IPR003340 GO:0003677
Vium1778g00001 348 MobiDBLite consensus disorder prediction 43 62 - -
Vium1778g00001 348 Gene3D - 155 274 IPR015300 -
Vium1778g00001 348 ProSiteProfiles B3 DNA-binding domain profile. 159 261 IPR003340 GO:0003677
Vium1778g00001 348 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 92 272 IPR044800 GO:0003700
Vium1778g00001 348 MobiDBLite consensus disorder prediction 111 139 - -
Vium1778g00001 348 Pfam B3 DNA binding domain 159 257 IPR003340 GO:0003677
Vium1778g00001 348 SMART B3_2 159 261 IPR003340 GO:0003677
Vium1778g00001 348 SUPERFAMILY DNA-binding pseudobarrel domain 157 250 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1778g00001 Vium-Chr1778 29924 33570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1778g00001 44 348 B3 DNA Binding Superfamily AT3G26790 45.723 9.22e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium1778g00001 B3 2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1778g00001 K09287 - gmx:100813055 446.432