Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1777g00001 ATGCCTCTGCCGCAGTCTCCACCCAACCCTCGCCGCGTCGATCCCAAAATCTGGCGGGCATGCGCCGGGGCCGCTGTGCACATCCCGAAGCTGCATTCTAGGGTTTACTACTTCCCGCAGGGCCACATGGAGCACGCTTCTCCGTCACATTCTCTCTCCCCTCCCTTCCGTTCCCTCCCCTTCGTTCCCTGCCTTGTGTCCTCCCGTGATTTGCTTGCTGATCCATTCTCCGACGAGGTCTTCGCCAGGCTCCTCCTCACTCCACTCCCTCACCCGTTTCACCGAAACAACCAGAACGACGACAGCAACATCCAAAGCGACGACGAAGAGCGCGAGTGCCAAAACGGCGTCGTTTCGTTCTCCAAAATCCTCACACCCTCCGACGCCAACAACGGCGGCGGCTTCTCCGTGCCGCGCTTCTGTGCGGACTCTGTCTTCCCTCCGCTCGATTTCCGCGCCGATCCTCCGGTCCAGCTCCTCTCCGTCACTGACATCCACGGCGTCGCGTGGCGTTTTCGCCACATCTACCGTGGTACACCACGTCGGCACCTCTTCACAACTGGCTGGAGCAAGTTTGTCAACCACAAGAAGCTCATAGCCGGCGATTCCGTTGTCTTTGTCAAGGACTCCGACGGGAACGTCTCGGTCGGGATCCGCCGTGCGACGCGGTTCGTCTCCTCATCCTCTCCTGTAGAGGAGGAGCAGCCGCCAGCGCAGGGAGAGGGGTTTCCGCTGTACGCGACCGGGAGAGTATCGCCGAAGGCAGTGAAGGCCGCAGCGGAGTGCGTGTCGCGGAACGCGCCGTTTGAGGTGGTGTATTATCCGAGGGCGGGTTTTGCGGATTTCGTGGTGAGTGCTGAGGTTGTGGAGGACGCGATGAGGTGCGCGTGGGCTGGTGGAATGAGAGTGAAGATAGGAATGGAGACTGAGGATTCTTCTAGGATGACGTGGTTTCAAGGGACGGTGACTTCTGCGTATGCCTCTGATAATGGACCTTGGCGCATGCTTCAGGTTAACTGGGATGAACCTGAAGTCTTACAAAATGCAAAACGAGTCAGTCCTTGGCAGGTTGAACTTGTTTCCCCCTCACTTGCACTTCATACAGCGTTTTCCCCTTCAAAAAGGTTTAGAGCTGACCAGGGATCTGGACTGTTTCGTGATAGGGAGGGAGACCCCTTCTTTCCTATGATAGGTTTCCCTAACTCAACAATGGGAAATATGGATAAAAAATTGTTGAGTTATGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGCATCAAGTTTTTCCAACTTTTTAAACGATAACTCTTATCTGTACATGGGTAGTAGTTCCTTTGGGAACAATACAGTGCAAAGTTTGGGAATTGTTTCTACGGATCTAAACATTAGCAGTTCTCAATCAGATGACACGTCACCACATAGCCAGAGTAGTTTACATTCCTTTGACACAGAGTTTACTGGGACCAGGCATTGCAACACCAAAGTTGGTTCTGGTTCAATCCTCTTATTTGGTAAGATCATACAGCCTGCTGAAAGTCCGCATGATGCTGCTGATTACATAGAACGTGATGGTAGCGGGGGCAGCAAAGAAATCGAAGACAGTTGA 1623 0.5348 MPLPQSPPNPRRVDPKIWRACAGAAVHIPKLHSRVYYFPQGHMEHASPSHSLSPPFRSLPFVPCLVSSRDLLADPFSDEVFARLLLTPLPHPFHRNNQNDDSNIQSDDEERECQNGVVSFSKILTPSDANNGGGFSVPRFCADSVFPPLDFRADPPVQLLSVTDIHGVAWRFRHIYRGTPRRHLFTTGWSKFVNHKKLIAGDSVVFVKDSDGNVSVGIRRATRFVSSSSPVEEEQPPAQGEGFPLYATGRVSPKAVKAAAECVSRNAPFEVVYYPRAGFADFVVSAEVVEDAMRCAWAGGMRVKIGMETEDSSRMTWFQGTVTSAYASDNGPWRMLQVNWDEPEVLQNAKRVSPWQVELVSPSLALHTAFSPSKRFRADQGSGLFRDREGDPFFPMIGFPNSTMGNMDKKLLSYDTFPAGMQGARHDLFSASSFSNFLNDNSYLYMGSSSFGNNTVQSLGIVSTDLNISSSQSDDTSPHSQSSLHSFDTEFTGTRHCNTKVGSGSILLFGKIIQPAESPHDAADYIERDGSGGSKEIEDS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1777g00001 540 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 514 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium1777g00001 540 FunFam Auxin response factor 118 222 - -
Vium1777g00001 540 Pfam Auxin response factor 259 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium1777g00001 540 MobiDBLite consensus disorder prediction 519 540 - -
Vium1777g00001 540 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Vium1777g00001 540 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
Vium1777g00001 540 CDD B3_DNA 119 220 IPR003340 GO:0003677
Vium1777g00001 540 Gene3D - 297 364 - -
Vium1777g00001 540 Gene3D - 117 222 IPR015300 -
Vium1777g00001 540 SMART B3_2 120 222 IPR003340 GO:0003677
Vium1777g00001 540 MobiDBLite consensus disorder prediction 521 540 - -
Vium1777g00001 540 SUPERFAMILY DNA-binding pseudobarrel domain 114 227 IPR015300 -
Vium1777g00001 540 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1777g00001 Vium-Chr1777 7148 11195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1777g00001 9 538 B3 DNA Binding Superfamily AT1G77850 47.943 2.08e-158 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium1777g00001 B3 2.5e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1777g00001 - - gmx:100805638 825.854