Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1774g00004 ATGGCTGAGAGTGCAGTGCGTTTTCTTCTCAAAAGGCTTACACCTGTTTTTGAGAATAAGGTGAAATTGTTCACTGGAGTTCAAGCAGAAGTGATATACCTGAAAGGACAGTTGGAGCTAATAAGAGCCTTCTTAAGGGTTGCAGATGCGTTAGAAGAGAGCGACGAGGAACTTAAAGTTTGGGTTAAGCAAGTCAGAGATGTTGTTCATGAGGCCGAAGATCTTCTTGATGAATTGGAACTTGTCCAGGTACATAACCTAACCAATGGATTCTCTATTTATCTCCGTATCAGGAATATGAAAGCTCGCTATCGGATTGCACATGAGTTAAAAAGCATCAACTCCCGCTTGAAAGCTATTTCTTCAAGTCGTAAGAGATTCCTCAGTAAACTGGACTCTTCTTCAGTGGCTTCAAGTTCCATTAATACAGGTAACGCATGGCACGATCAACGAGGAGATGCTCTTCTCCTGGACAACACTGATCTAGTGGGCATAGACAGGCCAAAAAAAAAGGTTATAGGATGGTTGATCAATGGTTGTCCTGGACGAAAAGTTATTTCTGTTACTGGAATGGGAGGGATAGGAAAAACTACTTTGGTGAAGAAAGTATATGATGATCCAGACGTAAAAAAACACTTCAAAGCTTGTGCTTGGGTGACTGTTTCTCAATCTTGTAAAATTGAAGAGCTTCTCAAAGACTTGGCCAAGAAGCTCTTTTCTGAGATAAGGCGACCAATTCCAGAGGGAATGGAAAGCATGTGTAGTGATAAGCTCAAAATGATAATCAAAGACTTGCTGCAGAAGAAGAGGTATCTAGTAGTATTTGATGATGTGTGGCATATGTATGAATGGGAAGCTGTCAAATATGCATTGCCAAACAACAATTGTAGTAGCAGGATCATGATCACCACTCGTAGATCTGATTTAGCCTTTACCTCCACAATAGAATCCAACGGTAAAGTGTATAACTTGCAACCCTTGAAACAAGATGAGGCTTGGGATCTATTTTGTAGAAACACCTTTCAAAGTGATTCATGTCCCTCATATTTGATTGACATCTGTAAATATATCTTAAGAAAATGTGAGGGTCTTCCCCTTGCAATTGTAGCAATCAGTGGTGTCCTGGCCACAAAAGACAAGCGCAGGATTGATGAGTGGGGTATGATTTGCCATAGTTTTGGAGCTGAAATTCAAGGCAACGGCAAACTTGATAATTTTAAAACTGTACTCAACCTCAGTTTTAATGATTTACCTTACCATTTGAAATACTGTTTCTTGTACTTAAGCATCTTTCCTCAGGACTATCTGATTCAGCGCATGAGATTGATTCGCTTATGGATAGCAGAAGGATTTATTGAAGCCAAAGAAGGAAAAACAAAGGAAGATGTTGCACATGATTACCTGAAGGAGCTCCTGAACAGAAACTTAATACAAGTAGCAGGTACAACAACTGATGGAAGGGTCAAAACTTTGCGAGTCCATGATCTTCTACGGGAGATCATCATTTTGAAGTCTAAAGACCAAAACTTTGCATCCATTGTCAAAGAACAAAGTGCTGCATGGCCAGAAAAGATTCGACGGCTTTCAGTGCACGGCACATTACCATATCGGCAACAACATAGGTCTGTCTCTCAACTCCGTTCTTTTTTAATGTTTGGGGTTGGAGAATATGTACCCCTTGGAAAACTGTTCCCAAGTGGTTTTAAACTGCTTAGTGTTTTAGATTATCAAGATGCACCTTTGAAGAAGTTTCCACTAGCAGTTATTGATCTATATCATTTAAGATATCTAAGTTTAAGGAACACAAAGGTGAAAACAGTTCCAGGTCACATAATAGGGAAGTTGCATAATCTAGAAACATTCGATCTAAAGAAGACTTCTGTCAGAGAATTGCCTGTAGATATTCTCAAGCTTCAAAAGCTTCGTCATCTCCTTGTCTATCAGTTGAAATTCAAAGGTTATGCACAGTTTCACTCCAAAGATGGTCTTAAGGCTCCCTCTGAAATAGGGAAATTAAAGTCACTACAAAAGCTTTGTTTTGTGGAGGCAAACCAAGACTGTGGAATGATAATAAGGCAGTTAGGGGAACTAAGTCAACTAAGAAGGTTGGGAATCTTGAAACTTAGAGAGGAAGATGGGATGGCTTTCTGTTTGTCCATTGAGAGATTAACTAATCTTCATGCCCTCTCTATTGCTTCTGAGGGTGAGAGTAAAGTCATTGATCTGACATTTCTCTGTTCGCCACCTCCATTTCTTCAACGCTTGTATTTGTCAGGGCGTCTACAAGAGTTACCAAGTTGGATACAGTCTCTTCATAGCCTAGCCAGGTTATTTCTGAAATGGAGCTGTTTAAGATACGATCCTCTAGTGTATCTACAAGATCTTCCAAACCTTGCACATCTTGAACTACTTAAGGTTTATGATGGTGACACTTTGCATTTTAGGAGTGGAAAGTTCAAGAAGCTCAAGGTTTTAGGTCTTGACAAATTTGACGGACTCAAAGAAGTGACAGTGGGGAAGGATGCCATGAACTGCCTAGAAAAACTGAGTATAGGGCGGTGTGAATTGTTGAAGAAGGTTCCATCAGGCATTGAGAATTTAACTAAGTTGAAAGTCCTTGAGTTTTTCGATATGCCAGATGAACTGATGAAGACAATATGTCCACATGGTCCCGGAAAAGATTACTGCAAAGTTTTACATATTCCAGATGTCTATTCTACCTACTGGAGAGATGGAGGTTGGGATGTTTATGCTTTGGACACTTTCAGCAGAGATTGTTCTCCTAGATCAGGCACTCTCATAAGAAGTCATGAACCTCGTATTCAGTGGAAGGTGTAG 2838 0.3999 MAESAVRFLLKRLTPVFENKVKLFTGVQAEVIYLKGQLELIRAFLRVADALEESDEELKVWVKQVRDVVHEAEDLLDELELVQVHNLTNGFSIYLRIRNMKARYRIAHELKSINSRLKAISSSRKRFLSKLDSSSVASSSINTGNAWHDQRGDALLLDNTDLVGIDRPKKKVIGWLINGCPGRKVISVTGMGGIGKTTLVKKVYDDPDVKKHFKACAWVTVSQSCKIEELLKDLAKKLFSEIRRPIPEGMESMCSDKLKMIIKDLLQKKRYLVVFDDVWHMYEWEAVKYALPNNNCSSRIMITTRRSDLAFTSTIESNGKVYNLQPLKQDEAWDLFCRNTFQSDSCPSYLIDICKYILRKCEGLPLAIVAISGVLATKDKRRIDEWGMICHSFGAEIQGNGKLDNFKTVLNLSFNDLPYHLKYCFLYLSIFPQDYLIQRMRLIRLWIAEGFIEAKEGKTKEDVAHDYLKELLNRNLIQVAGTTTDGRVKTLRVHDLLREIIILKSKDQNFASIVKEQSAAWPEKIRRLSVHGTLPYRQQHRSVSQLRSFLMFGVGEYVPLGKLFPSGFKLLSVLDYQDAPLKKFPLAVIDLYHLRYLSLRNTKVKTVPGHIIGKLHNLETFDLKKTSVRELPVDILKLQKLRHLLVYQLKFKGYAQFHSKDGLKAPSEIGKLKSLQKLCFVEANQDCGMIIRQLGELSQLRRLGILKLREEDGMAFCLSIERLTNLHALSIASEGESKVIDLTFLCSPPPFLQRLYLSGRLQELPSWIQSLHSLARLFLKWSCLRYDPLVYLQDLPNLAHLELLKVYDGDTLHFRSGKFKKLKVLGLDKFDGLKEVTVGKDAMNCLEKLSIGRCELLKKVPSGIENLTKLKVLEFFDMPDELMKTICPHGPGKDYCKVLHIPDVYSTYWRDGGWDVYALDTFSRDCSPRSGTLIRSHEPRIQWKV 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1774g00004 945 Pfam Rx N-terminal domain 5 82 IPR041118 -
Vium1774g00004 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 428 IPR027417 -
Vium1774g00004 945 Pfam NB-ARC domain 168 415 IPR002182 GO:0043531
Vium1774g00004 945 Gene3D - 414 504 IPR036388 -
Vium1774g00004 945 Gene3D Ribonuclease Inhibitor 544 889 IPR032675 -
Vium1774g00004 945 Gene3D - 326 413 IPR042197 -
Vium1774g00004 945 FunFam Probable disease resistance protein At1g63360 414 503 - -
Vium1774g00004 945 Gene3D - 4 126 - -
Vium1774g00004 945 PRINTS Disease resistance protein signature 185 200 - -
Vium1774g00004 945 PRINTS Disease resistance protein signature 613 629 - -
Vium1774g00004 945 PRINTS Disease resistance protein signature 361 375 - -
Vium1774g00004 945 PRINTS Disease resistance protein signature 265 279 - -
Vium1774g00004 945 FunFam Probable disease resistance protein At1g61300 153 318 - -
Vium1774g00004 945 Gene3D - 156 316 IPR027417 -
Vium1774g00004 945 CDD RX-CC_like 2 122 IPR038005 -
Vium1774g00004 945 SUPERFAMILY L domain-like 492 880 - -
Vium1774g00004 945 PANTHER DISEASE RESISTANCE PROTEIN RP 42 855 IPR044974 GO:0006952
Vium1774g00004 945 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1774g00004 Vium-Chr1774 25140 29414 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1774g00004 184 808 WRKY Transcription Factor Family AT5G45050 21.842 2.05e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1774g00004 K13457 - gmx:100805346 1650.95