Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1774g00002 ATGGCAGATAGTTCAGTATCGTTTTTACTGGACAAGCTGAATGCTTTACTTCAAGAAGAAGTGAATCTGCAGAGAGGGGTTCGGGAAGATGTTCAGTACATCAAATATGAGCTTGAACGTCACAAAGCCATCTTAAGGGTGGCTGATGCTATGGAGGACAGAGACCCTGAACTCAAAGCATGGGTCAAAGGAGTGAGATGTGTTGCTCATGACATGGAAGATGCCATAGACGAATTCAACCTTCGCCTTGTTGATCAACATGGACAAGGCAACGGTTCTTCTCTTCATAGGTTTACTTTCGGCCTTAAGACCATGAAAGCTCGGCGTAGAATTGCTTTAGATATGCAAAGTATCAAATCCAAAGTGAACGTTATATCCCAGGGACGACCAGAGTTACCTGGGATAGGCTCCAGGTCAAGTCAACGGCTTTCTTCAAGCCTTGATAGCCAAGGAGATGCGCTTCTGCTTGAAGAAGCTGATCTGGTGGGTATTGACAAACCCAAAAGGCAGCTTTGTGATTTGCTTTTCAATGAAGAACCAGGGAGGGCTGTGATTCCAATCTATGGAATGGGAGGGTTGGGAAAAACCACCTTGGCAAAACAGGTCTATGATGATCCAAAAGTGAAGAAGCGTTTTAGGATTCATGCTTGGATTAACGTTTCTCAGTCTTTTAAGCTACAAGAGCTCCTTAAAGACCTGGTTCAACAGCTGCATAATGTCATTGGAAAACCAGCTCCGGAAGCAGTTGGGCAAATGAAAAGAGAGGAGCTCAAAGAGTTGATCAAGAACTTGCTTCAAAGTAGCAGGTACCTCATTGTGCTGGATGATGTGTGGCATGTAAAGGTATGGGATTCTGTCAAACTTGCTTTGCCTAGTAGCAGCCGTGGAAGTAGAGTGATGATTACTACACGCAAAAAAGATATAGCTTTGTATTCTTGTGCTGAACTGGGTAAGGATTTTGACCATGAATTCTTACCTGAGGAAGAAGCTTGGTATCTTTTCTGCAAGAAAACATTTCAGGGTAACTCATGTCCTCCTCATCTGGAGGAGGTTTGCAGAAAGATCTTAAAAATGTGTGGTGGGTTGCCACTAGCAATTGTGGCAATTGGTGGTGCTTTGGCTACCAGACAGAGGGCAAACATTGAAGAGTGGCAGATGGTTTGCAGAAGTTTTGGGTCTGAAATTGAAGGCAATGACAAACTGGAGGATATGAAGAAAGTGCTTTCCCTAAGTTTCAATGAGTTGCCTTACTATCTTAAATCCTGTTTGTTGTACCTAAGCATCTTCCCTGAGTTTCATGCTATTGAGCACATGAGACTGATTCGCTTGTGGATTGCTGAAGGTTTTGTGAATGGTGAAGATGGAAAGACAAGGGAGGAAGTTGCTGACAGTTATCTCAAGGAGCTCTTGGACAGAAGTCTGCTGCAAGTTGTTGCAAAAACCAGTGATGGCAGAATGAAGACTTGTCGAATGCATGATCTTCTAAGGGAGATTGTGAATTTGAAGGCAAAAGATCAAAACTTTGCGACAATAGCCAAAGATCAAGAAATAATCTGGCCAGACAAAGTTCGACGCCTATCAATCATAAATACATTGGATAATGTGCGACAAAATAGAGCTTCATTCCAACTACGCTCTCTACTAATGTTTGACTTATCAGATCCACTGGAGCATTTTTCTATACGTGGATTATGTTCCACTGGTTATAAGTTAATCAGGGTGTTAGATTTGCAGGATGCACCATTGGAGGTTTTCCCTGCTGAAATTGTCAACCTTTACCTTCTCAAGTATCTGAGTCTGAAGAATACAAAGGTGAAAAGCATTCCAGGTACTATTAAGAAGCTGCAGCAGCTAGAGACACTGGATCTTAAACAATCCCTGGTCACTGTACTACCAGTTGAAATTGTGGAGCTGCAACAATTACGACATCTTTTGGTGTATCGCTATGAGATTGAATCTTATGCTTATTTCCATTCAAGGCACGGCTTCAAGGTGGCTGCCCCTATAGGACTCATGAGATCTTTGCAAAAGCTATGTTTTATAGAGGCAGACCAGGCTTTGATGGTTGAGCTAGGAAAACTCACTCAACTCAGAAGGCTTGGCATCAGAAAGATGAGGCAACAAGATGGTGCTGCTTTAAGTTTATCCATTGAGAAGATGATCAATCTCCGCTCACTGTCCATCACAGCAATTGAAAAACATGAGATAATTGATATTCACAACATTTTCAGGCCTCCTCCTTATCTCCACCAGTTATACTTGAGTGGCCGTTTAGACATTTTCCCCCACTGGATAAGTTCTATGAAGAATTTGGTCAGAGTGTTTCTTAAATGGAGCAGGCTAACAGAGGATCCTCTGGTACACCTTCAAGATTTGCCAAATCTAAGACATCTGGAATTTCTTCAAGTTTATGTAGGTGAGACATTGAATTTCAAGGCTAAAGGGTTTCCTAGTCTGAAGGTTTTAGGCCTTGATGATTTAGATGAACTCAAATCTATGACTGTGGAGGAGGGAGCAATGCCTGGTCTTAAAAGGCTCATCATCCAACGCTGTGGTTCACTGAAGCAGCTACCCTTTGGCATTGAACATCTAACAAAACTAAAATCAATTGAGTTTTTTGACATGCCTGAAGAATTGATCACAAGACTGCATCCAAAAGGAGGTCAAGATTATTTGAGAGCTAAAAATGTTCCAGCAGTTTATTCCTCATATTGGAGGGATGGAGGTTGGGATGTGTACTCATTGGAGACTCTAGAGGAGCGAGAGACTGATTTCAATCGCAGTACTGCAGTGAGAAGTCTTGAAAATTGTCCTCTCTGGAAGGTTTAA 2829 0.4217 MADSSVSFLLDKLNALLQEEVNLQRGVREDVQYIKYELERHKAILRVADAMEDRDPELKAWVKGVRCVAHDMEDAIDEFNLRLVDQHGQGNGSSLHRFTFGLKTMKARRRIALDMQSIKSKVNVISQGRPELPGIGSRSSQRLSSSLDSQGDALLLEEADLVGIDKPKRQLCDLLFNEEPGRAVIPIYGMGGLGKTTLAKQVYDDPKVKKRFRIHAWINVSQSFKLQELLKDLVQQLHNVIGKPAPEAVGQMKREELKELIKNLLQSSRYLIVLDDVWHVKVWDSVKLALPSSSRGSRVMITTRKKDIALYSCAELGKDFDHEFLPEEEAWYLFCKKTFQGNSCPPHLEEVCRKILKMCGGLPLAIVAIGGALATRQRANIEEWQMVCRSFGSEIEGNDKLEDMKKVLSLSFNELPYYLKSCLLYLSIFPEFHAIEHMRLIRLWIAEGFVNGEDGKTREEVADSYLKELLDRSLLQVVAKTSDGRMKTCRMHDLLREIVNLKAKDQNFATIAKDQEIIWPDKVRRLSIINTLDNVRQNRASFQLRSLLMFDLSDPLEHFSIRGLCSTGYKLIRVLDLQDAPLEVFPAEIVNLYLLKYLSLKNTKVKSIPGTIKKLQQLETLDLKQSLVTVLPVEIVELQQLRHLLVYRYEIESYAYFHSRHGFKVAAPIGLMRSLQKLCFIEADQALMVELGKLTQLRRLGIRKMRQQDGAALSLSIEKMINLRSLSITAIEKHEIIDIHNIFRPPPYLHQLYLSGRLDIFPHWISSMKNLVRVFLKWSRLTEDPLVHLQDLPNLRHLEFLQVYVGETLNFKAKGFPSLKVLGLDDLDELKSMTVEEGAMPGLKRLIIQRCGSLKQLPFGIEHLTKLKSIEFFDMPEELITRLHPKGGQDYLRAKNVPAVYSSYWRDGGWDVYSLETLEERETDFNRSTAVRSLENCPLWKV 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1774g00002 942 CDD RX-CC_like 2 126 IPR038005 -
Vium1774g00002 942 Gene3D - 5 112 - -
Vium1774g00002 942 FunFam Probable disease resistance protein At1g61300 152 316 - -
Vium1774g00002 942 Gene3D Ribonuclease Inhibitor 684 884 IPR032675 -
Vium1774g00002 942 Gene3D Ribonuclease Inhibitor 560 683 IPR032675 -
Vium1774g00002 942 Gene3D - 324 411 IPR042197 -
Vium1774g00002 942 Pfam NB-ARC domain 166 413 IPR002182 GO:0043531
Vium1774g00002 942 Gene3D - 150 314 IPR027417 -
Vium1774g00002 942 Pfam Rx N-terminal domain 6 89 IPR041118 -
Vium1774g00002 942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 426 IPR027417 -
Vium1774g00002 942 Gene3D - 412 502 IPR036388 -
Vium1774g00002 942 PANTHER DISEASE RESISTANCE PROTEIN RP 60 855 IPR044974 GO:0006952
Vium1774g00002 942 PRINTS Disease resistance protein signature 359 373 - -
Vium1774g00002 942 PRINTS Disease resistance protein signature 613 629 - -
Vium1774g00002 942 PRINTS Disease resistance protein signature 184 199 - -
Vium1774g00002 942 PRINTS Disease resistance protein signature 264 278 - -
Vium1774g00002 942 SUPERFAMILY L domain-like 490 877 - -
Vium1774g00002 942 FunFam Probable disease resistance protein At1g63360 412 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1774g00002 Vium-Chr1774 8355 11604 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1774g00002 184 644 WRKY Transcription Factor Family AT5G45050 22.336 6.29e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1774g00002 K13457 - gmx:100305458 1598.56