Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1774g00001 ATGGGGCGGAAACACGACGCCGTTTTGGTCGGCAAACCAGTTGCCGAAGAAGCACCCTACAGCCCCGAGCTCGATTCCGAGAAGAAGAAGAAGAAGAAGAAGAATAAGAACAAAGACATGCAGCAAGAAAGCGAAAACAGCCCCAAACGAAAGCTCGACGATCTCGACCCGCAAAACGGCACCGAATCGAAGAAGAAGAAAAAGAAGAAACACCACGACTCCAAAGAGAATGCAGAGGAAACCAACGGTGAAAGGAACAACGACAACGGCGCTAATCGCGATGAAACGGTGGCGGACGGCTCTGTAGTGGTTACTGGAAAGAATGCCGGAGATGCGAAATACGCAGCGGTGAAAAGCTTTTCGGAATCGGGACTGCCGGAGAATGTGCTGGAGTGTTGCAAGGGTTTCGAGAAGCCTTCTCCAATTCAATCGCGGGCGTGGCCTTTCTTATTGGACCGCCGTGATTTGATTGGAATCGCTGCCACTGGATCAGGGAAAACGTTGGCGTTCGGGATACCGGCGATTATGCATGTTTTGGGAAAGCGGAAGGGTAAAGGTTCCAGGGGACGGAACCCTCTTTGCCTCGTGCTCTCTCCTACTCGAGAGCTAGCACAACAAATATCAGATGTCATCTGTGATGCGGGTAGTTCTTGTGGTGTGGAATCAATCTGTTTGTATGGTGGAACCTCCAAAGGCCCACAAATCTCCTCACTAAAATCTGGCATGGACATTGTCATTGGAACTCCTGGTCGTATTCAGGATCTAATTGAAATGGGTGTCTGTTGCCTCAAAGAAGTATCTTTTGTGGTACTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAGCAAATAGTCCGCTCTATACTGGGTCAGACAAGTTCTGATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTGGCAGTTCATCACTTGGCTCAGGAGTTCATGGATCCCAATCCTGTAAAAGTTGTTGTAGGTTCAGAAGACTTGGCTGCCAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGATCGTGCTCGTGATAGGCGCCTGGTTGCTTTACTGGAAAAGTACCACAAATCTCAAAGCAATCGAGTATTGGTCTTTGTTTTGTACAAAAATGAAGCCAAACGAGTTGAAAATATGCTTCAAGAAGGGGGTTGGAAGGTTGTTTCAATACATGGGGACAAAGCTCAACATGATCGCACAAAGGCACTCTCATTGTTCAAAAAGGGAAGCTGTCCTTTAATGGTTGCTACTGATGTGGCTGCACGGGGATTGGATATTCCAGATGTTGAAGTAGTGATAAACTATAGTTTTCCTCTGACTACAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACAGCAGAATAAGGGACTTGCTGGGGAGCTGGTGAATGTTTTGAGGGAAGCAGGGCAAGTCGTACCCGATGACCTCCTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCCAAGCTTTACGGGGCGCACTTCAAGGAAATCCCTGTTGATGCTCCAAAGTCTCAAAAGAAAACATTTGACGACTCTGACGATGAATGA 1611 0.4699 MGRKHDAVLVGKPVAEEAPYSPELDSEKKKKKKKNKNKDMQQESENSPKRKLDDLDPQNGTESKKKKKKKHHDSKENAEETNGERNNDNGANRDETVADGSVVVTGKNAGDAKYAAVKSFSESGLPENVLECCKGFEKPSPIQSRAWPFLLDRRDLIGIAATGSGKTLAFGIPAIMHVLGKRKGKGSRGRNPLCLVLSPTRELAQQISDVICDAGSSCGVESICLYGGTSKGPQISSLKSGMDIVIGTPGRIQDLIEMGVCCLKEVSFVVLDEADRMLDMGFEQIVRSILGQTSSDRQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRARDRRLVALLEKYHKSQSNRVLVFVLYKNEAKRVENMLQEGGWKVVSIHGDKAQHDRTKALSLFKKGSCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGAHFKEIPVDAPKSQKKTFDDSDDE 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1774g00001 536 Gene3D - 328 503 IPR027417 -
Vium1774g00001 536 MobiDBLite consensus disorder prediction 37 63 - -
Vium1774g00001 536 Gene3D - 58 327 IPR027417 -
Vium1774g00001 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 474 IPR027417 -
Vium1774g00001 536 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 324 IPR014001 -
Vium1774g00001 536 MobiDBLite consensus disorder prediction 73 92 - -
Vium1774g00001 536 Pfam DEAD/DEAH box helicase 141 309 IPR011545 GO:0003676|GO:0005524
Vium1774g00001 536 MobiDBLite consensus disorder prediction 1 98 - -
Vium1774g00001 536 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 118 144 IPR014014 GO:0003724
Vium1774g00001 536 CDD DEADc 134 325 - -
Vium1774g00001 536 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 270 278 IPR000629 -
Vium1774g00001 536 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 63 496 - -
Vium1774g00001 536 CDD SF2_C_DEAD 338 470 - -
Vium1774g00001 536 Pfam Helicase conserved C-terminal domain 352 461 IPR001650 -
Vium1774g00001 536 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 353 500 IPR001650 -
Vium1774g00001 536 SMART helicmild6 380 461 IPR001650 -
Vium1774g00001 536 SMART ultradead3 135 341 IPR014001 -
Vium1774g00001 536 FunFam ATP-dependent RNA helicase RhlB 327 504 - -
Vium1774g00001 536 Coils Coil 23 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1774g00001 Vium-Chr1774 101 4460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1774g00001 117 469 Eukaryotic Initiation Factors Gene Family AT3G19760 33.239 4.68e-56 191