Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1767g00001 ATGGATTCCCGCGACTCCTCCCCCCGCTCCCGCGACCCCGACGCCGACAACCACCACCACCACTCCTTCGACGAGCCCCCGCCATCCCTCCATTCCAAGGTCAAGCTCATGTGCAGCTACGGCGGCCGAATCCAGCCTCGCCCCCACGACAACCACCTTACCTACGTCGCCGGCGACACCAAGATCCTCGCCGTAGACCGCCACATCAAGCTCCCCGCCCTCCTCACCAAACTCTCCTCCCTCGCCAACGCCCCCGCCAATGATACCTTCTTCAAGTACCAGCTCCCCGGCGAGGACCTCGACGCTCTAATCTCCGTCACCAACGACGAAGACCTCCACCACATGATGCTCGAGTACGATCGCCTCTGCCGCACCTCGCCCAGACCCGCACGCCTCCGCCTCTTTCTGTTCTCGCTCCACAACAATAATAGCAACAACAGCAACATCAATTTCGCACTCACCGATCCCAAACCCGAGCGGCAGTGGTTCGTCGACGCTCTGAATTCCGTTCAGGTTCCGCTTGTCGAAGGTTCTTCGCCGCCGCATACGGCAGCGCCAAATCCAGATTTTCTCTTCGGATTGGATAAGCAGCCGTCGGCGGCTGCCAATGCTCCTACGAAGAATCCTTCGCCGGAAACGGAATGCATCTCCGAGGATCGTCCAGCGTTCAGAGATGCCGAAACCGAAACGGAACGCGCGCCCGAGTCCGAGATTCGGAGGTTGCAGATTGGTCACAATACTGAGCAGCAACTCCTGCAACGGAAGATGAAAATAGAGGAAGATAATAACGGTAGGGTTAACGGGGTTAACGGCGCGGACGGTTTCTCTCAAAAGAAGACGGAGAATGTGACGCCGTTAGTTACGCAAGGACAAATGCAGGCGCAAGGTTTTCATTCTGGAACGGTGTCGTTTTTGCAGGAGAGGAATAATATGGGCTATTCGCTGGCGGTTCCTTCGACCGGGAGTGAGATTTATCTCATTCAGACGCCTTCTGGAATCTTCCAAGCGGTTCGGCCCGTGACAGGACCGGTTGGGCAACCGGTTTATCTGGTTCCGGCGCCTAGTTCAGTTGGCGTGGCGGCGGAGCGTGGATATTCTGCGGGACAGGGAGGAGCGCGGTGGTGA 1125 0.5796 MDSRDSSPRSRDPDADNHHHHSFDEPPPSLHSKVKLMCSYGGRIQPRPHDNHLTYVAGDTKILAVDRHIKLPALLTKLSSLANAPANDTFFKYQLPGEDLDALISVTNDEDLHHMMLEYDRLCRTSPRPARLRLFLFSLHNNNSNNSNINFALTDPKPERQWFVDALNSVQVPLVEGSSPPHTAAPNPDFLFGLDKQPSAAANAPTKNPSPETECISEDRPAFRDAETETERAPESEIRRLQIGHNTEQQLLQRKMKIEEDNNGRVNGVNGADGFSQKKTENVTPLVTQGQMQAQGFHSGTVSFLQERNNMGYSLAVPSTGSEIYLIQTPSGIFQAVRPVTGPVGQPVYLVPAPSSVGVAAERGYSAGQGGARW 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1767g00001 374 Gene3D - 54 139 - -
Vium1767g00001 374 MobiDBLite consensus disorder prediction 213 236 - -
Vium1767g00001 374 Pfam PB1 domain 50 137 IPR000270 GO:0005515
Vium1767g00001 374 PANTHER OS05G0427100 PROTEIN-RELATED 2 269 - -
Vium1767g00001 374 CDD PB1_UP2 37 137 - -
Vium1767g00001 374 MobiDBLite consensus disorder prediction 194 236 - -
Vium1767g00001 374 SMART PB1_new 48 139 IPR000270 GO:0005515
Vium1767g00001 374 MobiDBLite consensus disorder prediction 1 28 - -
Vium1767g00001 374 MobiDBLite consensus disorder prediction 1 30 - -
Vium1767g00001 374 SUPERFAMILY CAD & PB1 domains 49 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1767g00001 Vium-Chr1767 26663 28338 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1767g00001 33 213 MAP Kinase Kinase Kinase AT3G46920 35.294 2.69e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1767g00001 - - vra:106764239 702.205