Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1760g00016 ATGGGATCCAAAATTCTTCCGCAATGGGCATCCAAACCCTGCGCCATGGGAATCGACGAAGCTGGAAGAGGCCCTGTTTTAGGACCTATGGTTTACGGTTGCTTGTACTGTGCTCAGTCCTATTTGAAAACCCTAGCCACATTGAGTTTTGCAGATTCTAAGACACTAAAGGAAGAGAAGAGGGAAGAATTGTTTGAAACTTTAAAGACTAATGATTCTATTGGATGGGCTGTTGATGTCATTGATCCCCGGGAACTCTCTGCTAAAATGCTTAAGAAGAATAAGATAAACTTGAATGAGATTTCACATGACTCTGCCATGGGCCTCATTGATAGGGTGCTAAAAATGGGAGTGCTTCTAACCGAGGTGTATATAGACACAGTTGGAGATGCAGGGAAATATGAAATGAAGCTGTCTAGAAATTTTCCATCCATCAAATTTGTGGTTGCAAAGAAGGCTGACAGCCTTTACCCCGTTGTCAGTGGTGCAAGTATAGTTGCAAAGGTTACAAGGGACCGTGCTTTAAGAGAATGGGTACTTGATGAGACTGCTGAGAACATGCAGAGGGACTTTGGTTCTGGATATCCTGGAGACCCTCAAACCAAAGCTTGGCTGGAGGATCACAAACATCGTATCTTTGGATTTCCAACATTGGTTCGATTTAGTTGGGGAACCTGCAACTCTTATTTTAAAGACGTTGCACAAGTGTTATGGGACTCTGACAATCTGGATGAAGATGGCGGAGGTGGAAAAAATAGTAATGGCAAGCGGCAATTGAAATTAAGCAATGTGGGTTTCACCTCATCCAAGAGGGGAAGTGAAGAAATAGAATCTAGTGGTAAAGGACGCTGTAGGTTTTTTCAGGCTCGTAAACTTGAGCACCTTACTAATTTCTAA 897 0.4281 MGSKILPQWASKPCAMGIDEAGRGPVLGPMVYGCLYCAQSYLKTLATLSFADSKTLKEEKREELFETLKTNDSIGWAVDVIDPRELSAKMLKKNKINLNEISHDSAMGLIDRVLKMGVLLTEVYIDTVGDAGKYEMKLSRNFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWVLDETAENMQRDFGSGYPGDPQTKAWLEDHKHRIFGFPTLVRFSWGTCNSYFKDVAQVLWDSDNLDEDGGGGKNSNGKRQLKLSNVGFTSSKRGSEEIESSGKGRCRFFQARKLEHLTNF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1760g00016 298 Gene3D Ribonuclease hii. Domain 2 186 234 IPR023160 GO:0004523
Vium1760g00016 298 Pfam Ribonuclease HII 16 226 IPR024567 GO:0004523
Vium1760g00016 298 SUPERFAMILY Ribonuclease H-like 14 231 IPR012337 -
Vium1760g00016 298 FunFam Ribonuclease 187 234 - -
Vium1760g00016 298 CDD RNase_HII_eukaryota_like 16 232 - -
Vium1760g00016 298 Gene3D - 1 185 IPR036397 GO:0003676
Vium1760g00016 298 PANTHER RIBONUCLEASE H2 SUBUNIT A 4 285 IPR001352 GO:0003723|GO:0004523
Vium1760g00016 298 FunFam Ribonuclease 1 185 - -
Vium1760g00016 298 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 13 235 IPR024567 GO:0004523
Vium1760g00016 298 NCBIfam ribonuclease HII 16 227 IPR004649 GO:0004523|GO:0016070
Vium1760g00016 298 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1760g00016 5 298 Core DNA Replication Machinery Family AT2G25100 65.306 1.32e-143 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1760g00016 K10743 - gmx:100779875 562.377