Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1760g00015 ATGGCTTCTCATCTTGGTCAGATAAGTGCAACTCTTCCAATCCATTTTTTCAAGATTATTCTTGAAACTAATATTGAAAGGATAAAAGTACCTAGTAAGTTTACAAGGAAACATGGGAGTTTTCTGCCAAATCCAGTGTCTCTTAGGCCTCCAGATTCAAAGGAATGGGTAGTATATTGGACACAAGAAAATGGTGAAGTTTGGATAGAAAAGGGTTGGAAAGAGTTTGTTGAAAATTATTCCTTGAGTTATGGATATTTTGTGATGTTCAAATTCAAAGGAACATCCCAAATTGATGTAACCATACTTGAACCAAGTGCTGTAGAATTAGATTATTTTTCTTCTGGTAAGGAATCAGTTAAAACCATGAATGTAACTCAGATGGAGCAAGAGGCCAGACCAATGCCATCAATGGTCTCTTCTCAACCTTGTGAAAAAACCCAGAATGTGGAAAGAGACGCCAATATGCAGCAACAAGTGTATGCAGATAAGGGTGGTCCTTCTCATCAAGGGACAAATGTTCAAAAAATAATCAAGCAACAACCAAACTGGGTGAGGTCTACTCTAAGTGGAAAATGTCTGAATAAGCCAAGGTCACTAAAAGCTCAGAAAATAACCAAGAATTTTAAATCAAAATATCCTTACTTCACATCTTTGATAGTGAAGGCTAAGTTGGAAGAGAATGCTACGAAACACGTGCCCAAGTTTTTGAATTGTATGAGTGGCCAGAAGGATGTGATGTTGCAGATGGAGAATAGGGAGTGGTGGGTGAAGTTAATCTGTTGTCGTGAAAAATATGATGTTTTCTCTTCTGGTTGGTCTAAGTTTGCAAAAGAGAGTAATTTGGAAGTGGATGACGTTTGTATCTTTGAGTTGATTGATCCTGCAATTCCGATGCTTCGAGTTCATGTTGTCAAAAGCTAG 924 0.3766 MASHLGQISATLPIHFFKIILETNIERIKVPSKFTRKHGSFLPNPVSLRPPDSKEWVVYWTQENGEVWIEKGWKEFVENYSLSYGYFVMFKFKGTSQIDVTILEPSAVELDYFSSGKESVKTMNVTQMEQEARPMPSMVSSQPCEKTQNVERDANMQQQVYADKGGPSHQGTNVQKIIKQQPNWVRSTLSGKCLNKPRSLKAQKITKNFKSKYPYFTSLIVKAKLEENATKHVPKFLNCMSGQKDVMLQMENREWWVKLICCREKYDVFSSGWSKFAKESNLEVDDVCIFELIDPAIPMLRVHVVKS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1760g00015 307 PANTHER B3 DOMAIN-CONTAINING 14 295 - -
Vium1760g00015 307 Gene3D - 196 307 IPR015300 -
Vium1760g00015 307 SUPERFAMILY DNA-binding pseudobarrel domain 210 304 IPR015300 -
Vium1760g00015 307 SUPERFAMILY DNA-binding pseudobarrel domain 14 106 IPR015300 -
Vium1760g00015 307 CDD B3_DNA 15 103 IPR003340 GO:0003677
Vium1760g00015 307 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Vium1760g00015 307 Pfam B3 DNA binding domain 24 97 IPR003340 GO:0003677
Vium1760g00015 307 Pfam B3 DNA binding domain 241 296 IPR003340 GO:0003677
Vium1760g00015 307 SMART B3_2 16 106 IPR003340 GO:0003677
Vium1760g00015 307 SMART B3_2 216 306 IPR003340 GO:0003677
Vium1760g00015 307 Gene3D - 10 107 IPR015300 -
Vium1760g00015 307 CDD B3_DNA 238 306 IPR003340 GO:0003677
Vium1760g00015 307 ProSiteProfiles B3 DNA-binding domain profile. 216 307 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1760g00015 Vium-Chr1760 138344 139840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1760g00015 12 306 B3 DNA Binding Superfamily AT3G18990 25.220 8.33e-24 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium1760g00015 B3 4.8e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1760g00015 - - vun:114192490 490.73