Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1760g00006 ATGTTTCATGAGAGCAGCGTGACTCGGTGGCAGCCACAGCCGGTTCAGCCCACTGAGTGGACTCGCTACCACGACAAGCTCTTCGAGCGCGCTCTGCTCCTCGTGCCCGAGGACCTCCCTGACCGCTGGAACCAGATCGCCGTCCACGTTCCGGGAAAAACTCCGGCGGAGGTCAGGGAACACTACGACGCGCTCGTCCACGACGTCTTCGAGATTGACTCTGGCCGAGTCGAGGTCCCGAGTTACGTTGATGACTTGGCGCCACCACAACTCAGTGGCGGTGCCGGGAATTCTGCGTGGGACAGCGCTAATCAGATCTCATTCGGGTCCAAACCCAAGCAGGGCGAGACCGAAAGGAAGAAAGGCACGCCTTGGACTGAAGAGGAACACAGGCTATTTCTGATCGGGCTGAGCAAATTCGGAAAAGGAGATTGGAGAAGCATTTCAAGAAACGTGGTTGTGACAAGAACACCGACTCAAGTAGCCAGCCATGCTCAAAAGTACTTTCTCCGTCAGAATTCTGGGAAGAAGGAGAGGAAAAGATCAAGCATCCATGACATAACCACTGTGGATAGTAACTCTCTGCCTGTGCCCATTGACCAGAACTGGGTTCCTCCACCTGGTACTTCAATGCAGCAGTCATCACAAGACATGCTGTCGTACGCTTCCAGCAGCATGCAGGATCAAATGGGTCCATTTGGGTATTCGAACTATGGCTTTGAAATGTAG 729 0.5391 MFHESSVTRWQPQPVQPTEWTRYHDKLFERALLLVPEDLPDRWNQIAVHVPGKTPAEVREHYDALVHDVFEIDSGRVEVPSYVDDLAPPQLSGGAGNSAWDSANQISFGSKPKQGETERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSGKKERKRSSIHDITTVDSNSLPVPIDQNWVPPPGTSMQQSSQDMLSYASSSMQDQMGPFGYSNYGFEM 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1760g00006 242 ProSiteProfiles Myb-like domain profile. 117 169 IPR001005 -
Vium1760g00006 242 SMART sant 121 171 IPR001005 -
Vium1760g00006 242 SMART sant 16 68 IPR001005 -
Vium1760g00006 242 FunFam transcription factor MYB1R1 123 174 - -
Vium1760g00006 242 ProSiteProfiles SANT domain profile. 120 173 IPR017884 -
Vium1760g00006 242 MobiDBLite consensus disorder prediction 88 125 - -
Vium1760g00006 242 FunFam Transcription factor SRM1 13 79 - -
Vium1760g00006 242 MobiDBLite consensus disorder prediction 95 112 - -
Vium1760g00006 242 SUPERFAMILY Homeodomain-like 118 173 IPR009057 -
Vium1760g00006 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 173 IPR017930 -
Vium1760g00006 242 Pfam Myb-like DNA-binding domain 124 169 IPR001005 -
Vium1760g00006 242 CDD SANT 19 62 IPR001005 -
Vium1760g00006 242 NCBIfam myb-like DNA-binding domain, SHAQKYF class 120 172 IPR006447 GO:0003677
Vium1760g00006 242 SUPERFAMILY Homeodomain-like 14 65 IPR009057 -
Vium1760g00006 242 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 17 237 IPR043363 -
Vium1760g00006 242 CDD SANT 124 169 IPR001005 -
Vium1760g00006 242 Gene3D - 123 174 - -
Vium1760g00006 242 Gene3D - 16 79 - -
Vium1760g00006 242 ProSiteProfiles Myb-like domain profile. 12 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1760g00006 Vium-Chr1760 88274 96276 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium1760g00006 Myb_DNA-binding 4.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1760g00006 - - gmx:547481 399.823