Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium175g00002 CACTGTGCACAAATGCAGAAACGAAAAGCAGGGAGGAAGAAGTTCCATGAGACACGTCACCCGGTGTACAAAGGTGTGAGACAGAGGAACGGGAAATGGGTGTCTGAGTTACGACAACCTAATAACAAAAACGCACGCGTGTGGCTTGGAACCTTCGCACGCCCCGACATGGCTGCTGTTGCGTACGACGTTGCTGCTTTGGCTTTCAAGGGTGATAACGCTTCCTTGAACTTCCCTGACGCGATTTCTTCATTGCCGCATCTCAACTCGGCTACGTCCTCTGTCAAGACCATTCAGATTGCCGCGACAGAAGCAGCGGAGAAGCACTTTTCTTGTGCCGAGTTTCAAAAGCTGGGAGACTATCTTTCTTCAGAGGGAGGTTCTGGAAGCTTCTCTTGGGATGAAGATTGTTCGGAGCTGTCATCTGAAGAGAGTTCTAGAAAGTTCTTTTGGGATGAGGAAGAGGTGTTTAACATGCCGGAGTTGTTGAACAGCATGGCGGAAGCGTTGGTCATTACACCCCCTGCTTTGCAGAAAGGGTTCAATTGGGTTGGTGGGGAAACCACAGTAGATTTGACTCTGTGGCGAAACTGA 594 0.4983 HCAQMQKRKAGRKKFHETRHPVYKGVRQRNGKWVSELRQPNNKNARVWLGTFARPDMAAVAYDVAALAFKGDNASLNFPDAISSLPHLNSATSSVKTIQIAATEAAEKHFSCAEFQKLGDYLSSEGGSGSFSWDEDCSELSSEESSRKFFWDEEEVFNMPELLNSMAEALVITPPALQKGFNWVGGETTVDLTLWRN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium175g00002 197 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Vium175g00002 197 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Vium175g00002 197 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700|GO:0006355
Vium175g00002 197 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Vium175g00002 197 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Vium175g00002 197 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 196 IPR045277 GO:0003700
Vium175g00002 197 CDD AP2 23 81 IPR001471 GO:0003700|GO:0006355
Vium175g00002 197 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Vium175g00002 197 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium175g00002 Vium-Chr175 47248 47841 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium175g00002 7 195 AP2-EREBP Transcription Factor Family AT4G25490 46.632 7.98e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium175g00002 AP2 4.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium175g00002 - - var:108324544 358.992