Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium175g00001 ATGCAAAGCAGAACAGTAGCAGTAGCGTATTATCTCTCCCTCTATTATTATTTAATAATAACAACACCATTTCACTCTCTCCCCTCCTTCTTCCAGTCCCTACATTTGAATCACCAACTCCACTTTCTCTCTCTCTTTCTCACATTCTCTCTTATTTCTACCAAACGCGCTTCCCAAACCCCAAACCTAGCTACTTCCTTAATCATGGCCGAGAAGCACTTGCGGGACCTGCTTCTGGAGGACCAAGAGCCCTTCCTTCTCAAACACTACATTTCGGAACGACGTGCCCTCCTCAAAACACCTTCCCCAAACACAGCCATAACCAAAAACACCTCAAACTCAAACTTCCCACTTAACAAATGCCTCCTCTCCTTCCACAACGCTACCAAATCTCCACTCTTGGAATTCGCGCCGCTCACCAAGAAGCACAGTCCCCTCAGACCCTCCAACGCCAAAACCGCCACGCTCCTCCTTGAAGCCGCCCTCAGAATCCACAAACACGCCAAACCGAAGCCAAACAGGGCCTTGGGCCTCTTCGGCTCGCTCTTCAAAAAACTCAGGAGCCAACGGAAGAGGGGACAGATAAACGATGATGTTGTTGGCGTTGGGTTGGTGGGATCCTGCGAGGGCAGACTCAGCAGCAGTGGCTTGTGGTCGGAGAGCGAGAGCAACGAGGACAAGTCTTTGGACTTGAAAACTTGTAGTAGTGACCACTCCTTCGATGACTCCGTCGAACAAGAGATTCAGTTCCTCAACTCTCATGATCTCTTCTTCTGCCAAACCCCTTTCCGTTTCTCACTCCGGCAGATCCCCGACTACTCCCCCGGCCGCACGCCGGAATTCTCTTCGCCGCTCGCCTCTCCCCGTCGCCACCCAACTCAGGACAATGAAGTTAGTAGTGGTGATGGCGTCAACAAATTTCAATCTGGCGAAGAAGAGGAAGATAAAGAACAATGCAGTCCAGTGTCTGTTTTAGACCCACCCTTCGATGACGATGACAACGACCATGGAGAAGATGGCTTTGATTTGGACTGTAACTATGCCAATGTTCAAAGAACTACGCAGAATCTACTAGACAGGCTCCGTAGATTTGAGAAACTTGCAGAGCTAGATCCAGTGGAGCTTGAGAAGAGGATGTTAGACCAAGAAGATGAAACATTTATGGAAGAGGATGATGATTACGGTGAGAGCGAAAGAAAATGTGGTGAAGAAAATGTGGTTGAAATCCTGAGCCATTCAAGAGTTGATGAGAAGCAGGAAGCAGCTGAGGACCTTAAGAGACTGGTTTATGATCTGATCTTGGAGGAAGAGACAGAAGCGAGTTGCTCAGAAGGGAGGAACACAGTGGTGATGAGAAGGGTTTGCAGGAGGCTGGAGTTATGGAAGGAAGTGGAGTGCAACACCATTGATATGATGATTGAAGAGGATTTCTGCAGAGAAGAAGGTTGTTGGAAGAAAAATGGTGAGCTCAGAGGGGAGCTAGTTCAGGAAGTTGAGCTTGCAATCTTTTTCTATCTAGTGGAGGAACTTTCAGAGGAATTAGTATGTTGTTAG 1554 0.4807 MQSRTVAVAYYLSLYYYLIITTPFHSLPSFFQSLHLNHQLHFLSLFLTFSLISTKRASQTPNLATSLIMAEKHLRDLLLEDQEPFLLKHYISERRALLKTPSPNTAITKNTSNSNFPLNKCLLSFHNATKSPLLEFAPLTKKHSPLRPSNAKTATLLLEAALRIHKHAKPKPNRALGLFGSLFKKLRSQRKRGQINDDVVGVGLVGSCEGRLSSSGLWSESESNEDKSLDLKTCSSDHSFDDSVEQEIQFLNSHDLFFCQTPFRFSLRQIPDYSPGRTPEFSSPLASPRRHPTQDNEVSSGDGVNKFQSGEEEEDKEQCSPVSVLDPPFDDDDNDHGEDGFDLDCNYANVQRTTQNLLDRLRRFEKLAELDPVELEKRMLDQEDETFMEEDDDYGESERKCGEENVVEILSHSRVDEKQEAAEDLKRLVYDLILEEETEASCSEGRNTVVMRRVCRRLELWKEVECNTIDMMIEEDFCREEGCWKKNGELRGELVQEVELAIFFYLVEELSEELVCC 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium175g00001 517 PANTHER OS04G0572500 PROTEIN 69 514 - -
Vium175g00001 517 MobiDBLite consensus disorder prediction 274 342 - -
Vium175g00001 517 MobiDBLite consensus disorder prediction 287 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium175g00001 Vium-Chr175 11640 15492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium175g00001 71 515 TRM (TON1 Recruiting Motif) Superfamily AT2G36420 31.250 4.72e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium175g00001 - - vra:106769918 895.575