Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1758g00015 ATGTTATCTATTTTGTTGTTCTTATTCTCGTACATGTCTACGATTTCTTATTGTTCCTTAGACAGTTTAGCAGTGAGTGAATCCATCCAAGATATTAAGAACGAGACTTTGGTTTCAGCAGGTGGAATTACTGAACTGGGTTTCTTCAGTCCAGGAAATTCAGCAAGAAGATATTTGGGAATATGGTACCCAAATGTATCCCCTTTCACTGTGGTATGGGTGGCAAACCGAAATACACCTCTTGAGAATAATTCAGGAGTTCTCAAACTCAACCAAAAAGGGGTTCTTGAGCTATTCAATGGCACAAACAACATCATTTGGTCATCACCCAACAGATCAAGCAATACAGTGAATGATCCAATTACTCGTCTTTTGGATTCTGGAAATTTTGTAGTGAGAAATGGAGGGGAAACAAAGGAGGATAGCATCTTGTGGCAGAGTTTTGATTATCCGGGTGATACACAGATGCCAGAAATGAAGTTTGGATGGAACCTAGAGACTGGTGTGGAAAGATATATAGCATCTTGGAAAAGTGATGAGGATCCTGCAGAGGGAGAATATGTTATAAAAGTGGATCTTAGAGGATATCCTCAAATAATAAAGTTCAAGGGAACTGATATAAAAGCAAGAGCAGGGCCATGGAATGGCTTGTCTCTGGTTGGAAATCCTATTCCAGCTCGTGGTACGTCTGCAAAATTTGTGTTCAATGAAAAAGAGGTGTATTTTTGGTACAGTCTTAGTGATGAATTGGAATTCTTTGTGTACACACTGACCCCTTCAGGCACAGGACAAAGTTGGTTTTGGACAACTGAAACAAGGACGAGGCAAGTGGTCTCAAGTGGGGAGGAAGATCAATGCGAGAATTATGCCTTCTGTGGTGCAAATTCTGTATGCATTTATGATGGTAACTTTCCTATTTGTGAATGCCTAAGAGGGTATGTTCCTAAGTTTCCTGATGAGTGGAATATATCAATTTGGCACAATGGCTGTGTGCCAAGGAATAAATCTAACTGCACGAACATATACACAGATGGCTTCTTGAAATACAAGCACATGAAGTTGCCAGACACTTCTTCCTCATGGTTTGATGCAACCATGAACCTTGATGAATGTATGAAGTTGTGCATTAGAAACTGTTCTTGTACAGCATGTGCAAATTTAGATGTTCGTGACGAAGGAAGTGGTTGTCTGCTTTGGTTTAATGATCTGGTTGACATGAGGAATTTCTCTCAGTGGGGACAAGACTTTTACATCAGAGTCCCTGCTTCCGAATTAGATCATGCTGGCCATGGAAAAATCACCATAAAGATAGCAGCAATTACAGTTGGTGTGATTATTTTCGGATTAGTCACATGTGCATGCATAATTATAAGAAAAAATCCAGGGATAGCTAGAAAACTTTACAGCAAGCATAAGCAGAAAAAGGAAGACCTTGAATTTCCAACTTTCGATTTTCTGGTCATTGCTAATGCTACCCAAAACTTTTCAACCAAAAACAAGCTTGGTGAAGGTGGTTTTGGACCAGTATACAAGGGCATACTGTTAGATGGACAAGAGTTAGCAGTGAAAAGACTCTCAGAGAATTCCGGACAAGGGTTAGAAGAGTTCAAAAATGAAGTTGCTTTGATTGCAAAACTTCAGCACCGTAATCTTGTAAAGCTCCTGGGCTGTTGCATTGAAGGAGAAGAAAAAATGCTAATTTATGAATACATGCCAAACAAAAGCTTGGACTTCTTTGTTTTTGACGAAACCAAGAGGAAGTTGCTAGATTGGCGCATGAGATTCAACATTATCAGTGGCATTGCTCGAGGACTTCTCTATCTGCATCAAGATTCCAGACTAAGGATTATTCACAGAGATCTTAAAACTAGCAATATTTTACTAGACACAAATATGGATCCCAAAATAGCAGACTTTGGCTTGGCTCGATCATTTTTGGGAGATCAAGTTGAGGGAAAGACTCATAGGGTGGCTGGAACATATGGGTACATGCCTCCTGAGTATGCTGCACGTGGACATTTTTCAGTGAAATCAGATGTGTTTAGTTATGGTGTGATAGTACTAGAGATTGTAAGTGGGAAGAAAAACAGGGAATTTTCAGACCCAGAAAACAACAATAATCTTCTTGGCCATGCATGGAGATTATGGACTGAAGAGAGAGCACTCGAACTGCTTGATGAATTGATAGGAGAACAATGCCTAGAGTCTGAAGTCACTCGATGCATACAGGTCGGGCTATTGTGTGTGCAACAAAGACCAAACGTCAGACCAGACATGTCATCGGTGGTTCTAATGTTGAATGGTGAAAAATCATTACCAAAGCCAAAGGTTCCTGGCTTTTACACTGAATCAGATGTTACAACCGAAACAAATTCTTCATCAGAAAATCACACACTATGCTCAGTTAATGAGCTTTCCATCACAATGATAGATGCAAGATAG 2442 0.3993 MLSILLFLFSYMSTISYCSLDSLAVSESIQDIKNETLVSAGGITELGFFSPGNSARRYLGIWYPNVSPFTVVWVANRNTPLENNSGVLKLNQKGVLELFNGTNNIIWSSPNRSSNTVNDPITRLLDSGNFVVRNGGETKEDSILWQSFDYPGDTQMPEMKFGWNLETGVERYIASWKSDEDPAEGEYVIKVDLRGYPQIIKFKGTDIKARAGPWNGLSLVGNPIPARGTSAKFVFNEKEVYFWYSLSDELEFFVYTLTPSGTGQSWFWTTETRTRQVVSSGEEDQCENYAFCGANSVCIYDGNFPICECLRGYVPKFPDEWNISIWHNGCVPRNKSNCTNIYTDGFLKYKHMKLPDTSSSWFDATMNLDECMKLCIRNCSCTACANLDVRDEGSGCLLWFNDLVDMRNFSQWGQDFYIRVPASELDHAGHGKITIKIAAITVGVIIFGLVTCACIIIRKNPGIARKLYSKHKQKKEDLEFPTFDFLVIANATQNFSTKNKLGEGGFGPVYKGILLDGQELAVKRLSENSGQGLEEFKNEVALIAKLQHRNLVKLLGCCIEGEEKMLIYEYMPNKSLDFFVFDETKRKLLDWRMRFNIISGIARGLLYLHQDSRLRIIHRDLKTSNILLDTNMDPKIADFGLARSFLGDQVEGKTHRVAGTYGYMPPEYAARGHFSVKSDVFSYGVIVLEIVSGKKNREFSDPENNNNLLGHAWRLWTEERALELLDELIGEQCLESEVTRCIQVGLLCVQQRPNVRPDMSSVVLMLNGEKSLPKPKVPGFYTESDVTTETNSSSENHTLCSVNELSITMIDAR 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1758g00015 813 Gene3D Transferase(Phosphotransferase) domain 1 571 776 - -
Vium1758g00015 813 SMART serkin_6 495 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1758g00015 813 ProSiteProfiles EGF-like domain profile. 282 319 IPR000742 -
Vium1758g00015 813 SUPERFAMILY Protein kinase-like (PK-like) 478 781 IPR011009 -
Vium1758g00015 813 PIRSF SRK 1 813 IPR024171 GO:0004674
Vium1758g00015 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Vium1758g00015 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 337 420 - -
Vium1758g00015 813 Pfam PAN-like domain 342 406 IPR003609 -
Vium1758g00015 813 SMART ntp_6 341 420 IPR003609 -
Vium1758g00015 813 SMART blect_4 28 151 IPR001480 -
Vium1758g00015 813 ProSiteProfiles Protein kinase domain profile. 495 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1758g00015 813 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 5 754 - -
Vium1758g00015 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 182 IPR036426 -
Vium1758g00015 813 FunFam - 571 775 - -
Vium1758g00015 813 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
Vium1758g00015 813 Gene3D Hepatocyte Growth Factor 337 417 - -
Vium1758g00015 813 ProSiteProfiles Bulb-type lectin domain profile. 22 145 IPR001480 -
Vium1758g00015 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 15 148 - -
Vium1758g00015 813 CDD B_lectin 34 151 IPR001480 -
Vium1758g00015 813 Pfam Protein tyrosine and serine/threonine kinase 497 763 IPR001245 GO:0004672|GO:0006468
Vium1758g00015 813 Gene3D Phosphorylase Kinase; domain 1 468 570 - -
Vium1758g00015 813 CDD PAN_AP_plant 335 421 - -
Vium1758g00015 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 461 570 - -
Vium1758g00015 813 CDD STKc_IRAK 501 768 - -
Vium1758g00015 813 Pfam Domain of unknown function (DUF3403) 771 813 IPR021820 GO:0004674
Vium1758g00015 813 ProSiteProfiles PAN/Apple domain profile. 338 421 IPR003609 -
Vium1758g00015 813 Pfam D-mannose binding lectin 70 177 IPR001480 -
Vium1758g00015 813 Gene3D - 17 148 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1758g00015 Vium-Chr1758 166802 170192 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1758g00015 483 813 Receptor kinase-like Gene Family AT4G23140 55.263 1.34e-125 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1758g00015 PK_Tyr_Ser-Thr 8.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1758g00015 - - gmx:100815430 1290.79