Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1758g00014 ATGTTATCTATTTTGTTGTTCTTATTCTCGTACATGTCTACGATTTCTTATTGTTCCTTAGACAGTTTAGCAGTGAGTGAATCCATCCAAGATATTAAGAACGAGACTTTGGTTTCAGCAGGTGGAATTACTGAACTGGGTTTCTTCAGTCCAGGAAATTCAGCAAGAAGATATTTGGGAATATGGTACCCAAATGTATCCCCTTTCACTGTGGTATGGGTGGCAAACCGAAATACACCTCTTGAGAATAATTCAGGAGTTCTCAAACTCAACCAAAAAGGGGTTCTTGAGCTATTCAATGGCACAAACAACATCATTTGGTCATCACCCAACAGATCAAGCAATACAGTGAATGATCCAATTACTCGTCTTTTGGATTCTGGAAATTTTGTAGTGAGAAATGGAGGGGAAACAAAGGAGGATAGCATCTTGTGGCAGAGTTTTGATTATCCGGGTGATACACAGATGCCAGAAATGAAGTTTGGATGGAACCTAGAGACTGGTGTGGAAAGATATATAGCATCTTGGAAAAGTGATGAGGATCCTGCAGAGGGAGAATATGTTATAAAAGTGGATCTTAGAGGATATCCTCAAATAATAAAGTTCAAGGGAACTGATATAAAAGCAAGAGCAGGGCCATGGAATGGCTTGTCTCTGGTTGGAAATCCTATTCCAGCTCGTGGCACAGGACAAAGTTGGTTTTGGACAACTGAAACAAGGACGAGGCAAGTGGTCTCAAGTGGGGAGGAAGATCAATGCGAGAATTATGCCTTCTGTGGTGCAAATTCTGTATGCATTTATGATGGTAACTTTCCTATTTGTGAATGCCTAAGAGGGTATGTTCCTAAGTTTCCTGATGAGTGGAATATATCAATTTGGCACAATGGCTGTGTGCCAAGGAATAAATCTAACTGCACGAACATATACACAGATGGCTTCTTGAAATACAAGCACATGAAGTTGCCAGACACTTCTTCCTCATGGTTTGATGCAACCATGAACCTTGATGAATGTATGAAGTTGTGCATTAGAAACTGTTCTTGTACAGCATGTGCAAATTTAGATGTTCGTGACGAAGGAAGTGGTTGTCTGCTTTGGTTTAATGATCTGGTTGACATGAGGAATTTCTCTCAGTGGGGACAAGACTTTTACATCAGAGTCCCTGCTTCCGAATTAGATCATGCTGGCCATGGAAAAATCACCATAAAGATAGCAGCAATTACAGTTGGTGTGATTATTTTCGGATTAGTCACATGTGCATGCATAATTATAAGAAAAAATCCAGGGATAGCTAGAAAACTTTACAGCAAGCATAAGCAGAAAAAGGAAGACCTTGAATTTCCAACTTTCGATTTTCTGGTCATTGCTAATGCTACCCAAAACTTTTCAACCAAAAACAAGCTTGGTGAAGGTGGTTTTGGACCAGTATACAAGGGCATACTGTTAGATGGACAAGAGTTAGCAGTGAAAAGACTCTCAGAGAATTCCGGACAAGGGTTAGAAGAGTTCAAAAATGAAGTTGCTTTGATTGCAAAACTTCAGCACCGTAATCTTGTAAAGCTCCTGGGCTGTTGCATTGAAGGAGAAGAAAAAATGCTAATTTATGAATACATGCCAAACAAAAGCTTGGACTTCTTTGTTTTTGACGAAACCAAGAGGAAGTTGCTAGATTGGCGCATGAGATTCAACATTATCAGTGGCATTGCTCGAGGACTTCTCTATCTGCATCAAGATTCCAGACTAAGGATTATTCACAGAGATCTTAAAACTAGCAATATTTTACTAGACACAAATATGGATCCCAAAATAGCAGACTTTGGCTTGGCTCGATCATTTTTGGGAGATCAAGTTGAGGGAAAGACTCATAGGGTGGCTGGAACATATGGGTACATGCCTCCTGAGTATGCTGCACGTGGACATTTTTCAGTGAAATCAGATGTGTTTAGTTATGGTGTGATAGTACTAGAGATTGTAAGTGGGAAGAAAAACAGGGAATTTTCAGACCCAGAAAACAACAATAATCTTCTTGGCCATGCATGGAGATTATGGACTGAAGAGAGAGCACTCGAACTGCTTGATGAATTGATAGGAGAACAATGCCTAGAGTCTGAAGTCACTCGATGCATACAGGTCGGGCTATTGTGTGTGCAACAAAGACCAAACGTCAGACCAGACATGTCATCGGTGGTTCTAATGTTGAATGGTGAAAAATCATTACCAAAGCCAAAGGTTCCTGGCTTTTACACTGAATCAGATGTTACAACCGAAACAAATTCTTCATCAGAAAATCACACACTATGCTCAGTTAATGAGCTTTCCATCACAATGATAGATGCAAGATAG 2343 0.4003 MLSILLFLFSYMSTISYCSLDSLAVSESIQDIKNETLVSAGGITELGFFSPGNSARRYLGIWYPNVSPFTVVWVANRNTPLENNSGVLKLNQKGVLELFNGTNNIIWSSPNRSSNTVNDPITRLLDSGNFVVRNGGETKEDSILWQSFDYPGDTQMPEMKFGWNLETGVERYIASWKSDEDPAEGEYVIKVDLRGYPQIIKFKGTDIKARAGPWNGLSLVGNPIPARGTGQSWFWTTETRTRQVVSSGEEDQCENYAFCGANSVCIYDGNFPICECLRGYVPKFPDEWNISIWHNGCVPRNKSNCTNIYTDGFLKYKHMKLPDTSSSWFDATMNLDECMKLCIRNCSCTACANLDVRDEGSGCLLWFNDLVDMRNFSQWGQDFYIRVPASELDHAGHGKITIKIAAITVGVIIFGLVTCACIIIRKNPGIARKLYSKHKQKKEDLEFPTFDFLVIANATQNFSTKNKLGEGGFGPVYKGILLDGQELAVKRLSENSGQGLEEFKNEVALIAKLQHRNLVKLLGCCIEGEEKMLIYEYMPNKSLDFFVFDETKRKLLDWRMRFNIISGIARGLLYLHQDSRLRIIHRDLKTSNILLDTNMDPKIADFGLARSFLGDQVEGKTHRVAGTYGYMPPEYAARGHFSVKSDVFSYGVIVLEIVSGKKNREFSDPENNNNLLGHAWRLWTEERALELLDELIGEQCLESEVTRCIQVGLLCVQQRPNVRPDMSSVVLMLNGEKSLPKPKVPGFYTESDVTTETNSSSENHTLCSVNELSITMIDAR 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1758g00014 780 CDD STKc_IRAK 468 735 - -
Vium1758g00014 780 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 15 148 - -
Vium1758g00014 780 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 304 387 - -
Vium1758g00014 780 Gene3D Transferase(Phosphotransferase) domain 1 538 743 - -
Vium1758g00014 780 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 182 IPR036426 -
Vium1758g00014 780 Pfam PAN-like domain 309 373 IPR003609 -
Vium1758g00014 780 Pfam D-mannose binding lectin 70 177 IPR001480 -
Vium1758g00014 780 Pfam Protein tyrosine and serine/threonine kinase 464 730 IPR001245 GO:0004672|GO:0006468
Vium1758g00014 780 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 428 537 - -
Vium1758g00014 780 SMART ntp_6 308 387 IPR003609 -
Vium1758g00014 780 SMART blect_4 28 151 IPR001480 -
Vium1758g00014 780 SUPERFAMILY Protein kinase-like (PK-like) 445 748 IPR011009 -
Vium1758g00014 780 CDD PAN_AP_plant 302 388 - -
Vium1758g00014 780 SMART serkin_6 462 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1758g00014 780 ProSiteProfiles EGF-like domain profile. 249 286 IPR000742 -
Vium1758g00014 780 Gene3D Hepatocyte Growth Factor 304 384 - -
Vium1758g00014 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 583 595 IPR008271 GO:0004672|GO:0006468
Vium1758g00014 780 ProSiteProfiles Bulb-type lectin domain profile. 22 145 IPR001480 -
Vium1758g00014 780 Gene3D - 17 148 IPR036426 -
Vium1758g00014 780 Gene3D Phosphorylase Kinase; domain 1 435 537 - -
Vium1758g00014 780 Pfam S-locus glycoprotein domain 227 284 IPR000858 GO:0048544
Vium1758g00014 780 CDD B_lectin 34 151 IPR001480 -
Vium1758g00014 780 ProSiteProfiles PAN/Apple domain profile. 305 388 IPR003609 -
Vium1758g00014 780 FunFam - 538 742 - -
Vium1758g00014 780 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 5 721 - -
Vium1758g00014 780 PIRSF SRK 224 780 IPR024171 GO:0004674
Vium1758g00014 780 PIRSF SRK 1 231 IPR024171 GO:0004674
Vium1758g00014 780 Pfam Domain of unknown function (DUF3403) 738 780 IPR021820 GO:0004674
Vium1758g00014 780 ProSiteProfiles Protein kinase domain profile. 462 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1758g00014 Vium-Chr1758 166802 170192 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1758g00014 450 780 Receptor kinase-like Gene Family AT4G23140 55.263 8.46e-126 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium1758g00014 PK_Tyr_Ser-Thr 7.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1758g00014 - - gmx:100815430 1236.09