Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1758g00008 ATGGCAGCAACATTAATGGCAGCAGCCTCTGCAAGCACTGGCACTGTCCTTAAACCAACACCTTTCCTTGGCCAAAGTAGGGCAACCAATGCCAACCCTCTTAGAGATGTTGTCTCCATGGGACCTGGGAAATACATCATGGGAAATGAATTGTGGTATGGTCCAGACAGAGTGAAATACTTGGGACCCTTTTCGGCTCAGACTCCCTCTTATTTGACTGGAGAATTCCCAGGGGACTATGGATGGGACACTGCTGGATTGTCTGCTGATCCTGAAGCATTTGCCAAGAACAGGGCTCTTGAGGTGATCCATGGGCGTTGGGCTATGCTTGGAGCACTAGGATGCATCACCCCAGAAGTGCTTGAGAAGTGGCTGAAAGTGGACTTCAAGGAGCCAGTTTGGTTCAAAGCAGGAGCTCAAATATTCTCAGAAGGTGGCCTAGACTATCTGGGGAACCCTAACCTTGTGCATGCACAAAGCATCTTGGCCGTGCTAGGGTTCCAAGTTGTGCTTATGGGTCTTGTTGAAGGATTTCGCATCAATGGTCTTCCTGGTGTGGGAGAGGGCAATGATCTCTACCCTGGTGGCCAATACTTTGACCCTCTTGGCCTTGCTGATGACCCTGTCACTTTTGCTGAGCTCAAGGTTAAGGAGATCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTGCAAGCCATTGTCACTGGGAAAGGACCACTTGAGAACCTTTTGGATCACCTTGACAACCCTGTGGCTAACAATGCTTGGGTCTATGCCACCAAGTTTGTGCCTGGCTCTTAG 813 0.4945 MAATLMAAASASTGTVLKPTPFLGQSRATNANPLRDVVSMGPGKYIMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1758g00008 270 Gene3D Chlorophyll a/b binding protein domain 59 263 - -
Vium1758g00008 270 FunFam Chlorophyll a-b binding protein, chloroplastic 59 263 - -
Vium1758g00008 270 Pfam Chlorophyll A-B binding protein 69 236 IPR022796 -
Vium1758g00008 270 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 6 269 IPR001344 GO:0009765|GO:0016020
Vium1758g00008 270 SUPERFAMILY Chlorophyll a-b binding protein 51 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1758g00008 Vium-Chr1758 100406 102709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1758g00008 1 269 Chloroplast and Mitochondria Gene Families AT2G05070 67.509 1.95e-123 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1758g00008 K08914 - cave:132175650 526.554