Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1758g00006 ATGGAGGCCAGGACTCTGGAGAGGAAGAGATCACTGCTTGAGAGGGTCAGAAAGAATGTGGAAGAGGAACTGGAGAATGAAGTTGAGGAGGAGGATGAAAGTGGAGCTACTCTCACTGAAGAAGAGAAAAAAAGAGGGCTTGGTAGCAGCAATAGTGGTGGTGGGAGAAGAGGGTCAAGTGGGGCTGCTGCTGCTGCTGCTGGAGGAGTTTCTCCACCTTCATGTCAAGCAGAGAGGTGTGGTGCTGATTTGACTGATGCAAAGAGGTACCATCGCCGCCACAAGGTCTGTGAGTTTCACTCCAAAGCACCTGTTGTGGTGGTTGCAGGTCTGAGACAGAGGTTCTGCCAGCAATGTAGCAGGTTCCATGATCTGGCGGAGTTTGATGAGTCTAAGAGAAGCTGCCGGAGGCGGTTGGCCGGACACAATGAACGGCGCCGGAAAAGCAACCCTGAGGCTGCCAATGAGAGCAGCAGCAAAGGCCATCACCACCCTAAGGAAACAACACAGTGCAGAATTCAGATGAACCTTCCAGGGAGTTCTGGCTACAAGTCTTTCAACATCAGATGA 570 0.5193 MEARTLERKRSLLERVRKNVEEELENEVEEEDESGATLTEEEKKRGLGSSNSGGGRRGSSGAAAAAAGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKSNPEAANESSSKGHHHPKETTQCRIQMNLPGSSGYKSFNIR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1758g00006 189 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 35 156 IPR044817 GO:0003677
Vium1758g00006 189 SUPERFAMILY SBT domain 73 153 IPR036893 GO:0003677|GO:0005634
Vium1758g00006 189 Gene3D - 65 136 IPR036893 GO:0003677|GO:0005634
Vium1758g00006 189 MobiDBLite consensus disorder prediction 170 189 - -
Vium1758g00006 189 Pfam SBP domain 75 148 IPR004333 GO:0003677
Vium1758g00006 189 PIRSF SBP 6 161 IPR017238 GO:0003677|GO:0003700|GO:0009908
Vium1758g00006 189 MobiDBLite consensus disorder prediction 1 78 - -
Vium1758g00006 189 MobiDBLite consensus disorder prediction 139 189 - -
Vium1758g00006 189 MobiDBLite consensus disorder prediction 145 169 - -
Vium1758g00006 189 ProSiteProfiles Zinc finger SBP-type profile. 72 149 IPR004333 GO:0003677
Vium1758g00006 189 MobiDBLite consensus disorder prediction 1 23 - -
Vium1758g00006 189 Coils Coil 3 41 - -
Vium1758g00006 189 FunFam Squamosa promoter-binding-like protein 14 67 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1758g00006 Vium-Chr1758 44840 46571 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1758g00006 55 154 SBP-box Gene Family AT1G53160 64.000 7.01e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium1758g00006 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1758g00006 - - vra:106755766 279.641