Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1758g00005 ATGACCGGCAAAGAAATCCTTCACAAGATGAAGGAAAAAGTTTTGGGGCCATCTGATTCTGATTCAGGTAAAGGAAAGAGCAAGATGAAGAAGCACATTACTCATGGCTTTCACTTGGTAAAGGGAAGATCTGGTCATGCCATGGAAGACTATGTCGTTGCTCAGTTTAAGCAAGTTGATAACAATGAATTGGGTTTATTTGCTATATTCGATGGCCACTCAGGTCAAAGTGTGCCTGATTACTTGAAAACTCATTTGTTTGATAACATCTTGAAAGAGCCTAACTTCTGGACAGAACCTGCTGATGCTGTGAAGAGGGCATATAGTATAACTGATTCTACTATTTTAGACAAATCAGGTGAACTGGGTCGAGGGGGTTCAACTGCAGTTACCGCAATATTGATCAACTGTCAGAAGTTAGTAGTGGCCAATATTGGAGATTCCAGGGCTGTCTTGTGCCAGAATGGCCAGGCCAAACAACTATCAGTGGATCATGAGCCAAGTGTAGAAAGTGAGGATATAAAAAACAGAGGTGGTTTTGTGTCAAACTTCCCAGGGGACGTGCCACGAGTTGATGGTCAGTTGGCAGTGTCAAGGGCATTCGGTGACAAAAGCCTGAAGGTACACTTGAGCTCAGAACCACATGTGATTGTGGAGTTGATAGGCGATGATGCAGAGTTTGTTATCTTAGCCAGTGATGGGTTATGGAAGGTGATGACAAATCAAGAAGCAGTTGATGCAATCAGAGATGTTAAGGATGCTCGCTCTGCAGCAAAGATCCTTACTGAAGAAGCACGTAACAGGAAAAGCTCAGATGATATCTCTTGTGTTGTTGTGAAATTTCAGTGA 849 0.4287 MTGKEILHKMKEKVLGPSDSDSGKGKSKMKKHITHGFHLVKGRSGHAMEDYVVAQFKQVDNNELGLFAIFDGHSGQSVPDYLKTHLFDNILKEPNFWTEPADAVKRAYSITDSTILDKSGELGRGGSTAVTAILINCQKLVVANIGDSRAVLCQNGQAKQLSVDHEPSVESEDIKNRGGFVSNFPGDVPRVDGQLAVSRAFGDKSLKVHLSSEPHVIVELIGDDAEFVILASDGLWKVMTNQEAVDAIRDVKDARSAAKILTEEARNRKSSDDISCVVVKFQ 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1758g00005 282 FunFam Probable protein phosphatase 2C 39 24 282 - -
Vium1758g00005 282 SUPERFAMILY PP2C-like 29 281 IPR036457 -
Vium1758g00005 282 CDD PP2Cc 35 281 IPR001932 -
Vium1758g00005 282 PANTHER PROTEIN PHOSPHATASE 27 281 IPR015655 GO:0004722|GO:0006470
Vium1758g00005 282 MobiDBLite consensus disorder prediction 8 28 - -
Vium1758g00005 282 MobiDBLite consensus disorder prediction 8 27 - -
Vium1758g00005 282 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Vium1758g00005 282 SMART PP2C_4 24 279 IPR001932 -
Vium1758g00005 282 Pfam Protein phosphatase 2C 47 274 IPR001932 -
Vium1758g00005 282 Gene3D - 15 282 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1758g00005 Vium-Chr1758 38859 43413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1758g00005 1 282 PP2C-type Phosphatase Gene Family AT3G15260 76.471 1.89e-163 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1758g00005 K17506 - gmx:100787942 514.227