Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1758g00001 ATGGTGGGCTCAGGAACAGCAACAGATAGGAGCAAAGAAGCTATTGGGATGATGGCCCTTCACGAGGCCCTCAGAACTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGACCAAGAGTGAGAGGTGGCAATGGGTGCAAGGTTGGGGATGATAACGGCAGCTTGATGTTGATGTGGGAAGATGGGTTTTGCCGAGGAAGGGTTTCAGATTGTTTGGAAGAGATTGATGGAGAGGATCCTATCAGGAAATCTTTCAGCAAAATGTCGATTCAGTTATATAATTATGGAGAAGGGTTGATGGGAAAGGTTACATCTGATAAGTGCCACAAATGGGTCTTCAAAGAGCCTACGGAGTGTGAGCCTAATATGACCAACTACTGGCAAAGCTCCTTTGATGCTCTACCTCCTGAATGGATAGAACAGTTTGAGTCAGGCATTCAGACAATCGCTGTGATTCAAGCTGGGCATGGCCTTCTGCAGCTTGGTTCTTGCAAGATTATTCCTGAAGACCTTCATTTTGTGCTAAGAATGAGACACACTTTTGAATCTCTAGGCTACCAATCAGGATTCTACCTCTCACAACTCTTCTCTTCAACTAGGAACACTTCCTCTTCTACCTCCCTTCCTTCAAAACCATCCACCTTTCCAATCAGGCCACCCCCTCCAACCCTCAACTGGGGTCAAAGGCCAATTGGGTCTGCTACTTCATTGCTACCCTCTCCAACTTTTCAACATGCAGCCAGAATGGGGTTCCCACAGGCCAAAGATGAAACTCAAATGTTCCTCATGCCTCATTCATCATCAGAGCATGTGAGAATGGGAGACATGATGAGGGAGCATGAGAATGACATAAAGTGGCCAAATGGATTATCCATCTTCAATGTACTCACTGGAAGATCTGATGATGCTAAACTCTTGTTCAATCAAGAGAGTGCAAATCCAACCTCAGTAGTGCAGAATGCTAGTGTGGCAAACCCGAATGAGTTCTTGAGCTTGGATGGCCACTCTGAAGGGACAAGGAAAGTGGACAAGTTCAAGAGGTGCTTCACTCTACCTGCCAAAGTGGTTTCATCTTCATCCTCTACTTCTATGGATCACCATCATCAACAAGCAAGTGAGGAGTATAGGAATTCAGGTGGCATGTACCAGGATGTCATGGAGACCTTTTTGGAGTGA 1197 0.4595 MVGSGTATDRSKEAIGMMALHEALRTVCLNSDWTYSVFWTIRPRPRVRGGNGCKVGDDNGSLMLMWEDGFCRGRVSDCLEEIDGEDPIRKSFSKMSIQLYNYGEGLMGKVTSDKCHKWVFKEPTECEPNMTNYWQSSFDALPPEWIEQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFSSTRNTSSSTSLPSKPSTFPIRPPPPTLNWGQRPIGSATSLLPSPTFQHAARMGFPQAKDETQMFLMPHSSSEHVRMGDMMREHENDIKWPNGLSIFNVLTGRSDDAKLLFNQESANPTSVVQNASVANPNEFLSLDGHSEGTRKVDKFKRCFTLPAKVVSSSSSTSMDHHHQQASEEYRNSGGMYQDVMETFLE 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1758g00001 398 MobiDBLite consensus disorder prediction 365 385 - -
Vium1758g00001 398 PANTHER GB|AAF34833.1 1 398 IPR044170 -
Vium1758g00001 398 MobiDBLite consensus disorder prediction 209 237 - -
Vium1758g00001 398 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 20 76 IPR025610 -
Vium1758g00001 398 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 89 188 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1758g00001 Vium-Chr1758 4419 7824 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1758g00001 21 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 30.348 9.15e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1758g00001 - - gmx:100789006 697.582