Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1750g00002 ATGGAAATCAGTACCCCCAGCATAAAATTAACTTTCAGACCTCTGGAATCATCTTTTGCGTTTGTTAATGCCTTAGAACTGTTCGTACTACCCCTCCATCTGATATCCGACAAGGTGAGGCGTTTCACTCCTACTTGGGGTTCATCTTCCGACAGGGTAGGTTTGTACTCTCGGGTGTTGGAGACCAAACACAGGCTTAATGTTGGTGGCCAGACAATGAAAGATATCCTATTGAGAAACTGGATTCCAGATGATATATATCTCACTTATCCGGAAAACGCCAAGAATCGTTCTCCTTACCTGGGTCAAATTGTTCCCCGTGTAGTTGATGACTCCGATGGTCCAAACGCAACTAGTTATACTGCGCCATCTGAGGTGTACGGAACTGCTAAAGAGTCTAACATCTCTGCCAGTGCCGAAGACCTTAGCCTTTTCAACATAACATGGGCTCTTCCCGTGGACAACAACACAGATCATTTCCTTCGTCTTCACTTCTGTGACTATGTCAGTTCACAATTTGGCCTTACATACTTCGAACTTTCCATTTATGACTTCCATGTCATGCAGGTAAATAGTGACGGAAATGTGTCTAACGTGTCGCCTGCCCCTTATTATTATGATTTCATGGTGAACTCTGACAACTCTGGACATATTAAGGTCAGCCTAACACCTAATGGAACCGCTCCCGTACCAAATACCTTTTTAAACGGGCTGGAAATAATGAAAGTGATTGAATCATCAAATTCTGTCCCCCCTGACGAACCCGGTTCCAAGCATAATGGTCTTCCCGTGTTGCTGGGTTCCGTTCTCGGTGGTTTAGTCTTGGTTGTTGTTGTGGTGCTACTTGGCTTTCTTTGGCGTTCCAAAATGAGGAAGGAAAAGCCCGTTGAGAATTCGGACTGGTTGACAATTGTGTTTAATGCTGCACGAAGTTCTCACGGCAGATTGACTGATATAACTAATCACGGCTCTCCCCTTCCCAACCTAAACCTAGAGCTCAAAATTCCATTAGTTGATCTTCAACTGGCAACAAAGAACTTCCACGCAAGCCAGCTAATTGGCAAGGGTGGTTTTGGCAACGTCTACAAGGGAGTTCTCAAGAATGGCATGACGGTGGCTGTGAAAAGAAGCCAGCCAGGGTCAGGTCAAGGCCTTCCAGAATTTCAGACAGAGATCATGGTTTTGTCTAAGATTCGCCACAAGCACCTTGTTTCCTTAATTGGGTATTGTGATGAGAGGTTCGAGATGATTCTGGTCTATGAATACATGGAAAAAGGGACACTCAGGGATCATTTGTATAAAACAAAGTTGCCAAGTCTGCCCTGGAAGGTGAGGCTTCAAATTTGCATTGATTCTGCCAGGGGTCTTCATTACCTTCACAAAGGAGCAGCTGGGGGAATCATTCACCGTGATGTTAAGTCCACAAACATATTGCTTGATGAGAACCATGTTGCTAAGGTTGCTGATTTTGGTCTTTCAAGGTCAGGTCCTGCTGATACTCAACCTCATGTCACCACTGGTGTTAAAGGCACTTTTGGGTATCTTGATCCTGAGTATNTAATTCTGAAATTTGTGGCAACACTTTTCCATTTCCATTTTCATCCGTTGTACATAAATAAACTTTCAGAATACAAATAA 1638 0.4383 MEISTPSIKLTFRPLESSFAFVNALELFVLPLHLISDKVRRFTPTWGSSSDRVGLYSRVLETKHRLNVGGQTMKDILLRNWIPDDIYLTYPENAKNRSPYLGQIVPRVVDDSDGPNATSYTAPSEVYGTAKESNISASAEDLSLFNITWALPVDNNTDHFLRLHFCDYVSSQFGLTYFELSIYDFHVMQVNSDGNVSNVSPAPYYYDFMVNSDNSGHIKVSLTPNGTAPVPNTFLNGLEIMKVIESSNSVPPDEPGSKHNGLPVLLGSVLGGLVLVVVVVLLGFLWRSKMRKEKPVENSDWLTIVFNAARSSHGRLTDITNHGSPLPNLNLELKIPLVDLQLATKNFHASQLIGKGGFGNVYKGVLKNGMTVAVKRSQPGSGQGLPEFQTEIMVLSKIRHKHLVSLIGYCDERFEMILVYEYMEKGTLRDHLYKTKLPSLPWKVRLQICIDSARGLHYLHKGAAGGIIHRDVKSTNILLDENHVAKVADFGLSRSGPADTQPHVTTGVKGTFGYLDPEYXILKFVATLFHFHFHPLYINKLSEYK 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1750g00002 545 Gene3D Transferase(Phosphotransferase) domain 1 423 526 - -
Vium1750g00002 545 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Vium1750g00002 545 ProSiteProfiles Protein kinase domain profile. 347 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1750g00002 545 SMART serkin_6 347 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1750g00002 545 Gene3D Phosphorylase Kinase; domain 1 312 422 - -
Vium1750g00002 545 Gene3D - 60 244 - -
Vium1750g00002 545 FunFam receptor-like protein kinase FERONIA 312 422 - -
Vium1750g00002 545 Pfam Malectin-like domain 6 243 IPR024788 -
Vium1750g00002 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Vium1750g00002 545 FunFam Putative receptor-like protein kinase 58 244 - -
Vium1750g00002 545 SUPERFAMILY Protein kinase-like (PK-like) 323 523 IPR011009 -
Vium1750g00002 545 Pfam Protein tyrosine and serine/threonine kinase 349 518 IPR001245 GO:0004672|GO:0006468
Vium1750g00002 545 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 157 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1750g00002 Vium-Chr1750 5053 7094 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1750g00002 1 519 Receptor kinase-like Gene Family AT3G46290 42.831 4.43e-121 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium1750g00002 Malectin_like 6.5e-14 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1750g00002 - - vum:124827747 1068.91