Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1750g00001 ATGGCGACTGTTCAGCTCTGTGTGGCACTTCTTTTCCTTCTTCAGCTCTCATCGCTGCAGTTCGCTTCACTGGGCTACAACGTCCCAGATAAGTACTTCATAAATTGTGGGTCAGACAACAGTGTCACCGAAAGTGGAAAGGTCTACGTTGGTGAATCAACACCTCAAGCCACTTTTAGCAGCAGTAACACAGAAAGGAACCAGTCATCGGTACCTTCTCCTCTTTACCAAACAGCAAGGATTTTTCGAAGGGAGTCTTGGTATAAGTTCAACATCGATAATAATGGCACCTACCTGGTACGCCTCCACTTCTTCCCTTTCTCTTCTCCCACTAATCTTTCCTCTGCCAGGTTCAACGTTTCAGTTCCTGGCTTTTGGTTGTTGCAAAATTTTAATGGTAGAAATGATACCAATAACAACTCTGCTTTAGTAAAAGAGTTTTTCATGGAAATCAGTACCCCCAGCATAAAAGTAACTTTCAGACCTCTGGAATCATCTTTTGCGTTTGTTAATGCCTTAGAACTGTTCGTACTACCCCTCCATCTGATATCCGACAAGGTGAGGCGTTTCACTCCTACTTGGGGTTCATCTTCCGACAGGGTAGGTTTGTACTCTCGGGTGTTGGAGACCAAACACAGGCTTAATGTTGGTGGCCAGACAATGAAAGATATCCTATTGAGAAACTGGATTCCAGATGATATATATCTCACTTATCCGGAAAACGCCAAGAATCGTTCTCCTTACCTGGGTCAAATTGTTCCCCGTGTAGTTGATGACTCCGATGGTCCAAACGCAACTAGTTATACTGCGCCATCTGAGGTGTACGGAACTGCTAAAGAGTCTAACATCTCTGCCAGTGCCGAAGACCTTAGCCTTTTCAACATAACATGGGCTCTTCCCGTGGACAACAACACAGATCATTTCCTTCGTCTTCACTTCTGTGACTATGTCAGTTCACAATTTGGCCTTACATACTTCGAACTTTCCATTTATGACTTCCATGTCATGCAGGTAAATAGTGACGGAAATGTGTCTAACGTGTCGCCTGCCCCTTATTATTATGATTTCATGGTGAACTCTGACAACTCTGGACATATTAAGGTCAGCCTAACACCTAATGAAACCGCTGCAATACCAAATGCCTTTTTAAACGGGCTAGAAATATTGAAAGTGATTGAATCATCAAATTCTGTCCCCCCTGACGAACCCGGTTCCAAGCATAATGGTCTTCCCGTGTTGCTGGGTTCCGTTCTCGGTGGTTTAGTCTTGGTTGTTGTTGTGGTGCTACTTGGCTTTCTTTGGCGTTCCAAAATGAGGAAGGAAAAGCCCGTTGAGAATTCGGACTGGTTGACAATTGTGTTTAATGCTGCACGAAGTTCTCACGGCAGATTGACTGATATAACTAATCACGGCTCTCCCCTTCCCAACCTAAACCTAGAGCTCAAAATTCCATTAGTTGATCTTCAACTGGCAACAAAGAACTTCCACGCAAGCCAGCTAATTGGCAAGGGTGGTTTTGGCAACGTCTACAAGGGAGTTCTCAAGAATGGCATGACGGTGGCTGTGAAAAGAAGCCAGCCAGGGTCAGGTCAAGGCCTTCCAGAATTTCAGACAGAGATCATGGTTTTGTCTAAGATTCACCACAAGCACCTCGTTTCCTTAATTGGGTATTGTGATGAGAGGTTCGAGATGATTCTGGTCTATGAATACATGGAAAAAGGGACACTCAGGGATCATTTGTATAAAACAAAGTTGCCAAGTCTGCCCTGGAAGGTGAGGCTTCAAATTTGCATTGATTCTGCCAGGGGTCTTCATTACCTTCACAAAGGAGCAGCTGGGGGAATCATTCACCGTGATGTTAAGTCCACAAACATATTGCTTGATGAGAACCATGTTGCTAAGGTTGCTGATTTTGGTCTTTCAAGGTCAGGTCCTCTTGATACTCAACCTTATGTCACCACTGGTGTTAAAGGCACTTTTGGGTATCTTGATCCTGAGTATTTCAGGTCGCAACAGCTGACAGAAAAATCTGATGTCTACTCATTTGGGGTAGTTCTTTTGGAAGTTTTGTGTGCAAGAGAAGCGATTGACCCATCTCTTCCAACAGATCAGATAAACTTGGCGGAATGGGGAATGCTTTGCAAAAACAAGGGGATACTCCAAGATATCATCGATCCTTCCATCAAGGACCAAATTGATCAAAACTCACTCAGAAAATTTAGTGAGACGATAGAAAAATGCTTGCAAGAAGATGGTTCTGATAGGCCAACCATGGGCGATGTGTTGTGGGACTTGGAGTATGCGCTGCAGCTTCAGAAAGGTGCAAATGCAATACAGAGAGAGCCGTATGAGGATAGTTCTAGTAGTGTTTCCGCATCACTTCAACTTCCCAATGTTCGGCGTCTTCCTTCACTCTCCACACTGAGTGAAGCGGATGATACCATTGTAAGGGATGATGAATCCGATAGCACTGTGGATTATCTTTTCTCCCAGGTGAAGATTGATGATGCCAGATAG 2517 0.4422 MATVQLCVALLFLLQLSSLQFASLGYNVPDKYFINCGSDNSVTESGKVYVGESTPQATFSSSNTERNQSSVPSPLYQTARIFRRESWYKFNIDNNGTYLVRLHFFPFSSPTNLSSARFNVSVPGFWLLQNFNGRNDTNNNSALVKEFFMEISTPSIKVTFRPLESSFAFVNALELFVLPLHLISDKVRRFTPTWGSSSDRVGLYSRVLETKHRLNVGGQTMKDILLRNWIPDDIYLTYPENAKNRSPYLGQIVPRVVDDSDGPNATSYTAPSEVYGTAKESNISASAEDLSLFNITWALPVDNNTDHFLRLHFCDYVSSQFGLTYFELSIYDFHVMQVNSDGNVSNVSPAPYYYDFMVNSDNSGHIKVSLTPNETAAIPNAFLNGLEILKVIESSNSVPPDEPGSKHNGLPVLLGSVLGGLVLVVVVVLLGFLWRSKMRKEKPVENSDWLTIVFNAARSSHGRLTDITNHGSPLPNLNLELKIPLVDLQLATKNFHASQLIGKGGFGNVYKGVLKNGMTVAVKRSQPGSGQGLPEFQTEIMVLSKIHHKHLVSLIGYCDERFEMILVYEYMEKGTLRDHLYKTKLPSLPWKVRLQICIDSARGLHYLHKGAAGGIIHRDVKSTNILLDENHVAKVADFGLSRSGPLDTQPYVTTGVKGTFGYLDPEYFRSQQLTEKSDVYSFGVVLLEVLCAREAIDPSLPTDQINLAEWGMLCKNKGILQDIIDPSIKDQIDQNSLRKFSETIEKCLQEDGSDRPTMGDVLWDLEYALQLQKGANAIQREPYEDSSSSVSASLQLPNVRRLPSLSTLSEADDTIVRDDESDSTVDYLFSQVKIDDAR 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1750g00001 838 Gene3D Transferase(Phosphotransferase) domain 1 571 790 - -
Vium1750g00001 838 SMART serkin_6 495 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1750g00001 838 SUPERFAMILY Protein kinase-like (PK-like) 471 766 IPR011009 -
Vium1750g00001 838 FunFam Receptor-like protein kinase FERONIA 571 788 - -
Vium1750g00001 838 FunFam receptor-like protein kinase FERONIA 460 570 - -
Vium1750g00001 838 Gene3D Phosphorylase Kinase; domain 1 462 570 - -
Vium1750g00001 838 FunFam Putative receptor-like protein kinase 31 179 - -
Vium1750g00001 838 Pfam Malectin-like domain 34 391 IPR024788 -
Vium1750g00001 838 ProSiteProfiles Protein kinase domain profile. 495 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1750g00001 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Vium1750g00001 838 CDD STKc_IRAK 501 766 - -
Vium1750g00001 838 ProSitePatterns Protein kinases ATP-binding region signature. 501 523 IPR017441 GO:0005524
Vium1750g00001 838 Gene3D - 31 177 - -
Vium1750g00001 838 Gene3D - 208 392 - -
Vium1750g00001 838 PANTHER OS07G0166700 PROTEIN 482 772 IPR045272 GO:0004714|GO:0006468
Vium1750g00001 838 Pfam Protein tyrosine and serine/threonine kinase 497 762 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1750g00001 Vium-Chr1750 2404 5110 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1750g00001 3 838 Receptor kinase-like Gene Family AT2G23200 42.972 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium1750g00001 Malectin_like 1.2e-25 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1750g00001 - - gmx:100789555 1117.83