Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1747g00007 ATGCTAGTCTTGATCTGCTTCGTTTTTTCTCTCCAGGATGTAACAGCAACAAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACTGCTGCATTTTGCATTCCTGCGTTGGAAAAAATTGACCAAGATAATAATGTTATTCAAGTTGTTATACGTCCCACCCGAGAACTGGCTTTGCAGACTTCTCAAGTGTGTAAAGAACTTGGAAAACACTTGAACATTCAAGTTATGGTTACAACAGCTGATAAGCTTCTGTCCCCAGAGTTCCAACCTTCAATAGAGCAGCTGATTCATTTTCTTCCTTCAAACCGTCAAATCTTGATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGATTTCAAAGATAGGTATCTTCATAAACCTTATGTCATCAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATATTATGCATTTGTGGAAGAGAGGCAGAAAGTCCATTGCTTAAATACTCTATTTTCTAAGCTGCAAATAAACCAGTCTATCATTTTCTGCAACTCAGTGAATCGAGTAGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCATCGTAACAGAGTGTTTCATGACTTCCGCAATGGTGCATGTCGAAATCTTGTTTGTACTGATCTTTTTACTAGAGGAATAGACATTCAGGCAGTTAATGTTTTATTAATTTTGATTTTCCCCAAGAACTCAGAGACTTATTGGCACAGG 888 0.3806 MLVLICFVFSLQDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILXPTRELALQTSQVCKELGKHLNIQVMVTTADKLLSPEFQPSIEQLIHFLPSNRQILMFSATFPVTVKDFKDRYLHKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVLLILIFPKNSETYWHR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1747g00007 297 CDD DEADc_DDX6 22 175 - -
Vium1747g00007 297 Gene3D - 10 124 IPR027417 -
Vium1747g00007 297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 297 IPR027417 -
Vium1747g00007 297 SMART helicmild6 224 297 IPR001650 -
Vium1747g00007 297 Pfam DEAD/DEAH box helicase 45 121 IPR011545 GO:0003676|GO:0005524
Vium1747g00007 297 SMART ultradead3 39 188 IPR014001 -
Vium1747g00007 297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 175 IPR027417 -
Vium1747g00007 297 CDD SF2_C_DEAD 185 297 - -
Vium1747g00007 297 Pfam Helicase conserved C-terminal domain 199 297 IPR001650 -
Vium1747g00007 297 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 124 297 - -
Vium1747g00007 297 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 20 48 IPR014014 GO:0003724
Vium1747g00007 297 Gene3D - 182 297 IPR027417 -
Vium1747g00007 297 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 184 297 IPR001650 -
Vium1747g00007 297 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 174 IPR014001 -
Vium1747g00007 297 Gene3D - 125 181 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1747g00007 Vium-Chr1747 77566 79810 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1747g00007 22 297 Eukaryotic Initiation Factors Gene Family AT3G19760 31.385 1.47e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1747g00007 K12614 - rvl:131333106 529.635