LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1747g00006	ATGAACCACCACTACAACAACAGAGCGAGGTACCCTCCCGGAATGGGGCTTGGACGAGGAGGTTTTCATCCGAACGTCGGCCACAACCCCAACCTCAACCAGAACCCTGGCCTGAACCAGAATCAGGCGTTTCAGCCTCGGCCATCATACCAGCAACAGCCGCATTACGTGCAGAGGCATTTGATGCAACAGCCACAGCAGCAGCAGCAGTGGCTGAGAAGAGACGCCAATGCCGTTGACGAGGTCGAGAAGACCGTGCAGTCTGAAGCCGTGGATTCGAGCTCACAAGATTGGAAAGCAAGACTCAAGATTCCACCAGCTGATACACGCTATAAGACTGAGGATGTAACAGCAACAAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCCATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACTGGCAAAACTGCTGCATTTTGCATTCCTGCGTTGGAAAAAATTGACCAAGATAATAATGTTATTCAAGTTGTTATACTGGTCCCAACCCGAGAACTGGCTTTGCAGACTTCTCAAGTGTGTAAAGAACTTGGAAAACACTTGAACATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATAATGCGCTTATACCAACCAGTTCATTTACTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCTAAGAAAGGTGTTTGTATTATGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTGTCCCCAGAGTTCCAACCTTCAATAGAGCAGCTGATTCATTTTCTTCCTTCAAACCGTCAAATCTTGATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGATTTCAAAGATAGGTATCTTCATAAACCTTATGTCATCAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATATTATGCATTTGTGGAAGAGAGGCAGAAAGTCCATTGCTTAAATACTCTATTTTCTAAGCTGCAAATAAACCAGTCTATCATTTTCTGCAACTCAGTGAATCGAGTAGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCATCGTAACAGAGTGTTTCATGACTTCCGCAATGGTGCATGTCGAAATCTTGTTTGTACTGATCTTTTTACTAGAGGAATAGACATTCAGGCAGTTAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAGACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGGTTGGCAGTGAACTTGATTACTTACGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGAACTGAAATAAAGCAGATTCCACCGCAAATTGATCAGGCAATTTATTGCCGGTAA	1491	0.4205	MNHHYNNRARYPPGMGLGRGGFHPNVGHNPNLNQNPGLNQNQAFQPRPSYQQQPHYVQRHLMQQPQQQQQWLRRDANAVDEVEKTVQSEAVDSSSQDWKARLKIPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCIMKDCSMLVMDEADKLLSPEFQPSIEQLIHFLPSNRQILMFSATFPVTVKDFKDRYLHKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPQIDQAIYCR	496

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1747g00006	496	FunFam	ATP-dependent RNA helicase DDX6	327	496	-	-
	Vium1747g00006	496	MobiDBLite	consensus disorder prediction	1	54	-	-
	Vium1747g00006	496	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	192	476	IPR027417	-
	Vium1747g00006	496	CDD	DEADc_DDX6	124	324	-	-
	Vium1747g00006	496	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	269	277	IPR000629	-
	Vium1747g00006	496	Pfam	DEAD/DEAH box helicase	147	311	IPR011545	GO:0003676\|GO:0005524
	Vium1747g00006	496	Gene3D	-	66	326	IPR027417	-
	Vium1747g00006	496	MobiDBLite	consensus disorder prediction	27	54	-	-
	Vium1747g00006	496	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	153	323	IPR014001	-
	Vium1747g00006	496	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	63	495	-	-
	Vium1747g00006	496	Gene3D	-	327	496	IPR027417	-
	Vium1747g00006	496	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	122	150	IPR014014	GO:0003724
	Vium1747g00006	496	SMART	helicmild6	373	454	IPR001650	-
	Vium1747g00006	496	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	333	493	IPR001650	-
	Vium1747g00006	496	FunFam	ATP-dependent RNA helicase DDX6	103	326	-	-
	Vium1747g00006	496	SMART	ultradead3	141	337	IPR014001	-
	Vium1747g00006	496	CDD	SF2_C_DEAD	334	463	-	-
	Vium1747g00006	496	Pfam	Helicase conserved C-terminal domain	348	454	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1747g00006	Vium-Chr1747	60393	66877	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1747g00006	122	493	Eukaryotic Initiation Factors Gene Family	AT3G19760	38.235	7.17e-95	291

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1747g00006	K12614		-	gmx:106794117	920.998