Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1747g00004 ATGGGAAGGAAACCCTGTTGTGACAAGATGGGTATGAAGAAGGGTCCTTGGACTGCTGAAGAGGATGAGATTCTTGTCAATTATATCAACAAGAATGGTGGCCATGGAAGTTGGCGTTCTCTTCCCAAGTTAGCAGGTCTTCTTCGTTGTGGCAAGAGTTGTAGGCTAAGATGGACCAACTACCTCAGACCAGATATTAAACGTGGTTCCTTCACTTTTGAGGAAGAAAAACTAATCATACAGCTTCATGGTATCCTTGGAAATAGGTGGGCTGCTATAGCCTCTCAGCTACCAGGAAGAACAGACAATGAGATCAAGAACTTATGGAACACCCATTTGAAGAAACGTCTCATTTGCATGGGCCTAGACCCTCAAACCCACCAGCCACTCTCCTCTTCATGCAACCCTGATGGCAAGGCCCATGCAGCATCCACCTCAACCCGCCACATGGCCCAGTGGGAGAGTGCAAGGCTTGAAGCAGAGGCCAGGCTCTCAAGGGAGCCCTATTTGTTCAACAACTTCAACAAAACTGACTCTGACTACTTCCTCAGAATGTGGAACTCTGAAGTTGGACAATCTTTTCGTGGTGTGCACAAATCAGACAACAAAGGTAGCTGCCAAAGTCCCATTTCTCTAGGGTCATTGTCTGCTACCACCACCACAGATTTGGCTTCCAACCCTACAAGCATTGTGAAAGAGGATTTGGTGTGGGGTGGTAGCAAGAAAATAGCCTCTGATTCATCAAGCTCCAGTGAACTAGAAGAAGACTCGTGTGACACTTCATTGCAGCTCTTGTTAGACTTCCCTATAAACAATGACATGAGCTTCTTAGAATGA 837 0.4636 MGRKPCCDKMGMKKGPWTAEEDEILVNYINKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGSFTFEEEKLIIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLICMGLDPQTHQPLSSSCNPDGKAHAASTSTRHMAQWESARLEAEARLSREPYLFNNFNKTDSDYFLRMWNSEVGQSFRGVHKSDNKGSCQSPISLGSLSATTTTDLASNPTSIVKEDLVWGGSKKIASDSSSSSELEEDSCDTSLQLLLDFPINNDMSFLE 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1747g00004 278 SUPERFAMILY Homeodomain-like 10 109 IPR009057 -
Vium1747g00004 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vium1747g00004 278 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 241 - -
Vium1747g00004 278 FunFam MYB transcription factor 70 117 - -
Vium1747g00004 278 FunFam Myb transcription factor 11 68 - -
Vium1747g00004 278 CDD SANT 16 62 IPR001005 -
Vium1747g00004 278 Gene3D - 70 117 - -
Vium1747g00004 278 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vium1747g00004 278 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vium1747g00004 278 Gene3D - 12 68 - -
Vium1747g00004 278 SMART sant 67 115 IPR001005 -
Vium1747g00004 278 SMART sant 13 64 IPR001005 -
Vium1747g00004 278 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vium1747g00004 278 CDD SANT 70 113 IPR001005 -
Vium1747g00004 278 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vium1747g00004 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1747g00004 Vium-Chr1747 22154 25129 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1747g00004 1 278 MYB Transcription Factor Family AT3G61250 62.414 3.90e-121 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium1747g00004 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1747g00004 K09422 - gmx:100788528 457.218