Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1747g00003 ATGATCTTGCAACTTTATAGGTTATGCAATACATTGTTGATTAAGATGGGAAGGAAACCCTGTTGTGACAAGATGGGTATGAAGAAGGGTCCTTGGACTGCTGAAGAGGATGAGATTCTTGTCAATTATATCAACAAGAATGGTGGCCATGGAAGTTGGCGTTCTCTTCCCAAGTTAGCAGGTCTTCTTCGTTGTGGCAAGAGTTGTAGGCTAAGATGGACCAACTACCTCAGACCAGATATTAAACGTGGTTCCTTCACTTTTGAGGAAGAAAAACTAATCATACAGCTTCATGGTATCCTTGGAAATAGGTGGGCTGCTATAGCCTCTCAGCTACCAGGAAGAACAGACAATGAGATCAAGAACTTATGGAACACCCATTTGAAGAAACGTCTCATTTGCATGGGCCTAGACCCTCAAACCCACCAGCCACTCTCCTCTTCATGCAACCCTGATGGCAAGGCCCATGCAGCATCCACCTCAACCCGCCACATGGCCCAGTGGGAGAGTGCAAGGCTTGAAGCAGAGGCCAGGCTCTCAAGGGAGCCCTATTTGTTCAACAACTTCAACAAAACTGACTCTGACTACTTCCTCAGAATGTGGAACTCTGAAGTTGGACAATCTTTTCGTGGTGTGCACAAATCAGACAACAAAGGTAGCTGCCAAAGTCCCATTTCTCTAGGGTCATTGTCTGCTACCACCACCACAGATTTGGCTTCCAACCCTACAAGCATTGTGAAAGAGGATTTGGTGTGGGGTGGTAGCAAGAAAATAGCCTCTGATTCATCAAGCTCCAGTGAACTAGAAGAAGACTCGTGTGACACTTCATTGCAGCTCTTGTTAGACTTCCCTATAAACAATGACATGAGCTTCTTAGAATGA 882 0.4546 MILQLYRLCNTLLIKMGRKPCCDKMGMKKGPWTAEEDEILVNYINKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGSFTFEEEKLIIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLICMGLDPQTHQPLSSSCNPDGKAHAASTSTRHMAQWESARLEAEARLSREPYLFNNFNKTDSDYFLRMWNSEVGQSFRGVHKSDNKGSCQSPISLGSLSATTTTDLASNPTSIVKEDLVWGGSKKIASDSSSSSELEEDSCDTSLQLLLDFPINNDMSFLE 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1747g00003 293 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Vium1747g00003 293 SMART sant 28 79 IPR001005 -
Vium1747g00003 293 SMART sant 82 130 IPR001005 -
Vium1747g00003 293 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 256 - -
Vium1747g00003 293 ProSiteProfiles Myb-like domain profile. 24 77 IPR001005 -
Vium1747g00003 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 132 IPR017930 -
Vium1747g00003 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 77 IPR017930 -
Vium1747g00003 293 Gene3D - 85 132 - -
Vium1747g00003 293 FunFam Myb transcription factor 26 83 - -
Vium1747g00003 293 SUPERFAMILY Homeodomain-like 25 124 IPR009057 -
Vium1747g00003 293 Pfam Myb-like DNA-binding domain 29 77 IPR001005 -
Vium1747g00003 293 Pfam Myb-like DNA-binding domain 83 128 IPR001005 -
Vium1747g00003 293 FunFam MYB transcription factor 85 132 - -
Vium1747g00003 293 CDD SANT 31 77 IPR001005 -
Vium1747g00003 293 CDD SANT 85 128 IPR001005 -
Vium1747g00003 293 Gene3D - 27 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1747g00003 Vium-Chr1747 22154 25331 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1747g00003 16 293 MYB Transcription Factor Family AT3G61250 62.414 6.38e-121 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium1747g00003 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1747g00003 K09422 - gmx:100788528 457.218