Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1747g00001 ATGGGTTATGAAGAAGGGTCCTTGGAACTGCTGAAGGATGAAGATTCTTGTCAAATTATATTCAAACAAGAAAAATTGGTGGCCATGGGAAGTTGGCGTGTTCTTCAATTTCAGGTTCTTCGTTGTGGCAAGAGTTGTAGGCTAAGATGGACCAACTACCTCAGACCAGATATTAAACGTGGTTCCTTCACTTTTGAGGAAGAAAAACTAATCATACAGCTTCATGGTATCCTTGGAAATAGGTGGGCTGCTATAGCCTCTCAGCTACCAGGAAGAACAGACAATGAGATCAAGAACTTATGGAACACCCATTTGAAGAAACGTCTCATTTGCATGGGCCTAGACCCTCAAACCCACCAGCCACTCTCCTCTTCATGCAACCCTGATGGCAAGGCCCATGCAGCATCCACCTCAACCCGCCACATGGCCCAGTGGGAGAGTGCAAGGCTTGAAGCAGAGGCCAGGCTCTCAAGGGAGCCCTATTTGTTCAACAACTTCAACAAAACTGACTCTGACTACTTCCTCAGAATGTGGAACTCTGAAGTTGGACAATCTTTTCGTGGTGTGCACAAATCAGACAACAAAGGTAGCTGCCAAAGTCCCATTTCTCTAGGGTCATTGTCTGCTACCACCACCACAGATTTGGCTTCCAACCCTACAAGCATTGTGAAAGAGGATTTGGTGTGGGGTGGTAGCAAGAAAATAGCCTCTGATTCATCAAGCTCCAGTGAACTAGAAGAAGACTCGTGTGACACTTCATTGCAGCTCTTGTTAGACTTCCCTATAAACAATGACATGAGCTTCTTAGAATGA 813 0.4551 MGYEEGSLELLKDEDSCQIIFKQEKLVAMGSWRVLQFQVLRCGKSCRLRWTNYLRPDIKRGSFTFEEEKLIIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLICMGLDPQTHQPLSSSCNPDGKAHAASTSTRHMAQWESARLEAEARLSREPYLFNNFNKTDSDYFLRMWNSEVGQSFRGVHKSDNKGSCQSPISLGSLSATTTTDLASNPTSIVKEDLVWGGSKKIASDSSSSSELEEDSCDTSLQLLLDFPINNDMSFLE 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1747g00001 270 Pfam Myb-like DNA-binding domain 60 105 IPR001005 -
Vium1747g00001 270 SUPERFAMILY Homeodomain-like 38 112 IPR009057 -
Vium1747g00001 270 Gene3D - 62 109 - -
Vium1747g00001 270 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Vium1747g00001 270 CDD SANT 62 105 IPR001005 -
Vium1747g00001 270 Gene3D - 22 59 - -
Vium1747g00001 270 SMART sant 59 107 IPR001005 -
Vium1747g00001 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Vium1747g00001 270 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 29 233 - -
Vium1747g00001 270 FunFam MYB transcription factor 62 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1747g00001 Vium-Chr1747 12745 15351 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1747g00001 1 270 MYB Transcription Factor Family AT3G61250 54.225 1.69e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium1747g00001 Myb_DNA-binding 1.2e-13 CL0123