Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1741g00004 ATGGCTATTGCTGGTCTACACAGTGTGTCTGTGCTCGACTCTCCTTTCCTCAGGGATTCCCATTCCCAGTCGTCTAGGAGAGGGGGAGAGGGAAGACGGGGAAGCACCCGGTCATCTTCACTCTTGCAAATGTGGCGAGAGATTGAAGATGAACATGTGGTGAATCAAGTTCAAGGAAGGCCTGGTGATGTACCTCTTGATCAAAGGAGGAATGGGTTGATTGCTGAGCTCTCTCAGGAAGATAGACTGGATATCCAAGAGAGAGGGCAGGGGCATGTTTTAGAAGATGCAGTTTTGGTTGAGAATGAATCTGAAACATGGTCACAGTCACCAAGTCATAATGAGTCCCATGAAGATCACGAGGATTTAAATAATTCTAGCTGTGAAAACTCTTCTGATTTAGGAGAAGTTGAAAGGGAAAGAGTTAGGCAAATTTTCAGGGAATGGATGAATAGTGGTGCCAGGGATCATGTATCAAGTGGATCCCGACGAAGTAGTGGTTCAAGGAGAGAATGGCTTGGGGAAACTGAACAGGAAAGGGTGAGAATTATTAGGGAGTGGGTACAAATGAGTAGCCAGCAGAGAAGTGTTTCATCTGGGGAAAACAGGGAAGAACCATCTGCTGAAATTGGTACACAAATTGAACGTGTTCGTGATGGACTCATTGTTAACCAGAATGGGGGCCAAAATGAGCATACACGGAGGGGCATACGGAAATTATGCGGCCGACAGGCTATGCTTGATATGCTTAAGAAGGCTGAAAGAGAGAGGCAAAGAGAAATTGAGGATTTGTCAGTACATCGGGCTGTATCTCAATTCCCCTATCGTAATCGAATTCAGGCATTGCTTAGAGGCAGATTCTTGAGAAATGATAGACCTGTCGATAATAACAGGCCCCTATCTGTTGCAGAAAGTGAATTGGGCTTCTTGAGGCGTAAACAAACTGTATCAGGTCTAAGGGAGGGGTTTATCGCTAGAAAGGAGAATTGTGGTTGCAGTCAAGCAACCAGCAATGTATCTGATACCTCGTCAAATGTTGATAATATTGATTTTAGCACTAATGAACAAATGGGATCAAACAGTTCACATTTAGTCCCAATTGTACATTCTGAACAGTCTGACCCTAATGACAGAGGAAGCGATGGTCTCAGGGTATCAGACAGCCAGAGCTGTGTACAAGGTACCACATCTGAGAACCTAAGTTGCCAAGAATCTAATGCTCAAGTAGGAGATCGAATGCAACATTTGCCTATTGAATCACTAGATTGCCAATCATCATTCAGTGCTAGTGTTGAAAGAGTGAACAACAACACCGAGCAAAATGTTGATGTGTTGCCTATTGATTATGGTGCTAATGAAATTACCCAACAAAGCTTGCGAATTGAAGATTCGCAGCATAGTAATAACCAGGAATTCAGTGAGGTGCATATTGAGCATTCTGAGCTGTGTGATATAAATAGTAACGAAAACAATTCTTCAAATCATGACATTCATATGGATGGTAATGTCGACGATGTAAATTGGAATGAATCTAGTGCTCTGGAAGTAGAACAGCCAGAAGAAGCTTTTGAAAATGAAGGAAGTGACTGGTATCAGAATAATATCGAATGGAGAAATAGTGCTGAGGAAAATGCGGATGGTAATCAGATCAGTAACACAGGAAATGAGTGGCCAGAAAACACTTTGGGAAATGCGGGTGGAGAAAACTCTCATCTGCAAGAATCTCATGAGGCATGGCAAGAAGATGGTGGCTTCCAAGAGGCTGTGGAAAATTGGTTGGGAGGACCTTCAGATCATGAAAATGCTCCAGTTGGTAGAATTCGAGGATTTTATTTTCCTGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAACTTCTTAATAGGAGAAGTGTCTCGAACCTCCTTCACAGCAGTTTCCGGGACAGTCTGGATCAGTTAATACAATCATATGTTGAAAGGCAAGGTAATGCAAACATTGACTGGGAATTGCAAGAAACAACCCCATCATCTGACTCGGTAGAGCAGGACCTTGAACAGCAAAGTAGAGATCAAATTGTTGATCAGGAGGGTCCTGTTAATAGTCCACTTGATCTGCCCTCTTTACCTATACCGCCTCCTCTGCCTCTATGGGACCAGCACCACCACCATCGTGACAACTGGTCACAGAATGACATAAATAATCAGCGTCTAGGAATTGATTGGGAGATTGTTAATGACTTGAGAATTGACATGGCTCGATTGCAACAAAGGATGAATAACATGCAGAGAATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTGCAGCGCTCTATAAGACAAGAAGTTTCTGCAGCCCTAAATCGCTCTGCTGGTTCGTCTGAAGTACATGATTATTGCGAGTCACCAGAAGATAAATCTAAATGGGAATGTGTGAGAAAAGGTCTTTGCTGTGTATGCTGCGAAAGCAATATCGATTCTTTGTTGTACAGATGTGGTCATTTGTGTACATGTTCAAAATGTGCCAATGAGTTGCTCCAAAGCAGGAAGAAATGCCCTATGTGTCAAGCACCTGTGGTGGAGGTGATAAGGGCTTACTCTATACAATAA 2592 0.4313 MAIAGLHSVSVLDSPFLRDSHSQSSRRGGEGRRGSTRSSSLLQMWREIEDEHVVNQVQGRPGDVPLDQRRNGLIAELSQEDRLDIQERGQGHVLEDAVLVENESETWSQSPSHNESHEDHEDLNNSSCENSSDLGEVERERVRQIFREWMNSGARDHVSSGSRRSSGSRREWLGETEQERVRIIREWVQMSSQQRSVSSGENREEPSAEIGTQIERVRDGLIVNQNGGQNEHTRRGIRKLCGRQAMLDMLKKAERERQREIEDLSVHRAVSQFPYRNRIQALLRGRFLRNDRPVDNNRPLSVAESELGFLRRKQTVSGLREGFIARKENCGCSQATSNVSDTSSNVDNIDFSTNEQMGSNSSHLVPIVHSEQSDPNDRGSDGLRVSDSQSCVQGTTSENLSCQESNAQVGDRMQHLPIESLDCQSSFSASVERVNNNTEQNVDVLPIDYGANEITQQSLRIEDSQHSNNQEFSEVHIEHSELCDINSNENNSSNHDIHMDGNVDDVNWNESSALEVEQPEEAFENEGSDWYQNNIEWRNSAEENADGNQISNTGNEWPENTLGNAGGENSHLQESHEAWQEDGGFQEAVENWLGGPSDHENAPVGRIRGFYFPEDDNVYSVELRELLNRRSVSNLLHSSFRDSLDQLIQSYVERQGNANIDWELQETTPSSDSVEQDLEQQSRDQIVDQEGPVNSPLDLPSLPIPPPLPLWDQHHHHRDNWSQNDINNQRLGIDWEIVNDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSEVHDYCESPEDKSKWECVRKGLCCVCCESNIDSLLYRCGHLCTCSKCANELLQSRKKCPMCQAPVVEVIRAYSIQ 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1741g00004 863 SUPERFAMILY RING/U-box 810 856 - -
Vium1741g00004 863 MobiDBLite consensus disorder prediction 102 136 - -
Vium1741g00004 863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 795 861 IPR013083 -
Vium1741g00004 863 MobiDBLite consensus disorder prediction 544 575 - -
Vium1741g00004 863 MobiDBLite consensus disorder prediction 689 710 - -
Vium1741g00004 863 MobiDBLite consensus disorder prediction 544 573 - -
Vium1741g00004 863 Coils Coil 243 263 - -
Vium1741g00004 863 Coils Coil 738 765 - -
Vium1741g00004 863 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 456 863 - -
Vium1741g00004 863 MobiDBLite consensus disorder prediction 192 206 - -
Vium1741g00004 863 MobiDBLite consensus disorder prediction 369 390 - -
Vium1741g00004 863 Pfam Zinc finger, C3HC4 type (RING finger) 808 855 - -
Vium1741g00004 863 ProSiteProfiles Zinc finger RING-type profile. 811 850 IPR001841 -
Vium1741g00004 863 MobiDBLite consensus disorder prediction 17 39 - -
Vium1741g00004 863 MobiDBLite consensus disorder prediction 192 216 - -
Vium1741g00004 863 MobiDBLite consensus disorder prediction 112 126 - -
Vium1741g00004 863 CDD mRING-HC-C3HC5_NEU1 811 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1741g00004 Vium-Chr1741 32037 37080 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1741g00004 811 857 C3H Transcription Factor Family AT3G06140 40.426 2.41e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1741g00004 - - gmx:100801329 1391.33