Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium173g00003 ATGATGTCCAGAATGAACACCGTTGGATGGATGGAGGAACGTGAAGACGACGACAACTCTGCTTCTTGGCCAAGAAACAAGCCCACCAACACCATCATCGTCACCGACACAACGCCCACAACAAAGCCAACAACAGCAGCATCCGCAGCTGCTTTCGTAGAAAACAACACTTCCCGCGACGATTTAGCTTCTCTCTGCGCCTTCAAGCCCATGCTGGAGCTGGACGACGAATGGTACATCAGTAATCACCACCACCACCATAACAGCCACCACCACCAAGACATGACCTTCTCCCCCACCTTCCCCGATTCCGACAACCTCCTCCTCCCCGCCGTCGACTCCTCCTCCTCCTGCTCCCCCTCCTCCTCCGTCTTTACCAACCTCGACCCTTCCTCCTCCCACCTTCACTACTTCCTCCCTCCCAAACCCCCCACTCTATCGTCCCTCCTCAACCCCTTCGACATCCCCTTTCTTGACCCTCAAGCTTCCTCATCCTTCCCGCTTCTTCCCTCCGCCCATTTCCCCTCCGATACGCCTTCTCAGACCGCCACCGCCACCGCCTTCGCCGGCTTCCACAGCCTCGAAGACGGGTCCTCCAAGCCTCTGTTTCACCAGCGCTCCAAGATTCTGCGGCCCCTGGAGTCCCTGCCCCCCTCCGGGGCGCCACCCACGCTCTTTCAGAAGAGGGCGGCGCTCAGGAAGAACATGTCTGCCGGTGAAGGGAGTGAGAAGAAGAGGAAGGAGAGGGAGGAGGTGGTGGAGGATGTGAGTTTTGATGGGTCTGGGTTGAACTATGATTCCGATGATTTGACTGAGATTAATAACAACAGTGGTAGGGTGGATGAGGGTAGTGCTAAGAACGGTGGGAACAGTTCCAATGCGAACAGCAGTGTCACTGGGTTGGATCAGAAAGGGAAGAAAAAGGGAATGCCTGCTAAGAATTTGATGGCAGAACGACGGCGCAGGAAGAAGCTCAATGATAGACTCTACATGCTTAGGTCCGTTGTTCCTAAGATTAGCAAAATGGACAGGGCTTCAATTCTTGGGGATGCAATAGAGTATCTTAAGGAGCTTCTGCAAAGGATCAATGATCTTCATAACGAGTTGGAGTCTACACCACCTGGTTCTTCCCTCACTCCTTCCTCCAATTTCCATCCTTTGACGCCTACTCCTCCCACACTGCCCAGTCGTATCAAAGAAGAATTGTGCCCCAGCTCATTACCAAGCCCCAATGCTCAACCTGCTAGGGTTGAGGTTCGGCTACGCGAAGGAAGGGCTGTTAACATCCACATGTTTTGTGCCCGCAAGCCTGGTCTGTTGCTCTCAACCATGAGGGCTATGGATAACCTTGGATTAGACATTCAGCAGGCTGTTATTAGCTGCTTCAATGGATTTGCTATGGACATTTTTCGAGCCGAGCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAGATCAAAGCAGTTCTCTTGGATTCAGCTGGCTACAGTGGCATGATGTAA 1503 0.5309 MMSRMNTVGWMEEREDDDNSASWPRNKPTNTIIVTDTTPTTKPTTAASAAAFVENNTSRDDLASLCAFKPMLELDDEWYISNHHHHHNSHHHQDMTFSPTFPDSDNLLLPAVDSSSSCSPSSSVFTNLDPSSSHLHYFLPPKPPTLSSLLNPFDIPFLDPQASSSFPLLPSAHFPSDTPSQTATATAFAGFHSLEDGSSKPLFHQRSKILRPLESLPPSGAPPTLFQKRAALRKNMSAGEGSEKKRKEREEVVEDVSFDGSGLNYDSDDLTEINNNSGRVDEGSAKNGGNSSNANSSVTGLDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPPGSSLTPSSNFHPLTPTPPTLPSRIKEELCPSSLPSPNAQPARVEVRLREGRAVNIHMFCARKPGLLLSTMRAMDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGYSGMM 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium173g00003 500 MobiDBLite consensus disorder prediction 1 42 - -
Vium173g00003 500 FunFam BHLH transcription factor 305 373 - -
Vium173g00003 500 MobiDBLite consensus disorder prediction 369 384 - -
Vium173g00003 500 Coils Coil 348 372 - -
Vium173g00003 500 CDD ACT_UUR-ACR-like 429 489 - -
Vium173g00003 500 SMART finulus 315 364 IPR011598 GO:0046983
Vium173g00003 500 Gene3D - 303 372 IPR036638 GO:0046983
Vium173g00003 500 MobiDBLite consensus disorder prediction 267 302 - -
Vium173g00003 500 CDD bHLH_AtAMS_like 312 377 - -
Vium173g00003 500 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 150 496 - -
Vium173g00003 500 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 309 358 IPR011598 GO:0046983
Vium173g00003 500 MobiDBLite consensus disorder prediction 23 42 - -
Vium173g00003 500 Pfam Helix-loop-helix DNA-binding domain 316 358 IPR011598 GO:0046983
Vium173g00003 500 MobiDBLite consensus disorder prediction 238 256 - -
Vium173g00003 500 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 376 IPR036638 GO:0046983
Vium173g00003 500 MobiDBLite consensus disorder prediction 235 313 - -
Vium173g00003 500 MobiDBLite consensus disorder prediction 369 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium173g00003 Vium-Chr173 33752 36774 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium173g00003 68 473 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 51.770 8.70e-118 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium173g00003 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium173g00003 - - gmx:100217332 623.239