Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium173g00002 ATGGCATCATCCGAGGTGACGATGAAGGGAAATTGCTTGAACCATAACGACGGCGGAGCTGTGGAGGCTCAGGCGCCGGCCACGGCCAAAGACGCAGAAGCTGCACTTTTCAGGGAACTGTGGCACGCGTGTGCCGGTCCTCTCGTGACCGTGCCGCGCGAAGGAGAGCGCGTGTTTTATTTTCCTCAGGGACATATCGAGCAGGTTGAGGCGTCGACGAATCAGGTGGCGGACCAGCACATGCCGGTTTACGATCTCCCACCCAAGATCCTTTGTCGGGTCATCAACGTGCAGCTGAAGGCCGAGCCCGACACGGATGAGGTGTTCGCTCAGGTCACCTTGCTTCCGGAGCCAAATCAAAATGAGAATGACGTGGAGAAAGAACCGCCACTGCCCCCGCCACCGCGGTTTCACGTTCATTCTTTCTGTAAAACCCTGACAGCGTCCGATACCAGTACCCATGGTGGGTTTTCCGTGCTGAGACGGCATGCTGATGAATGCCTTCCCCCTCTGGATATGTCGAAGCAGCCACCCACTCAGGAATTGGCAGCTAAGGATCTTCATGGAAACGAATGGCGATTTAAACACATCTTTCGGGGTCAGCCCCGTAGACACTTGCTTCAGAGTGGTTGGAGTGTTTTTGTTAGCTCCAAAAGGCTTGTCGCTGGGGATGCGTTTATATTTCTTAGAGGTGAAAACGGGGAACTTCGAGTTGGTGTCAGGCGAGCAATGAGACAACAGGGTAATGTTCCATCCTCAGTGATCTCAAGTCACAGCATGCATCTTGGGGTCCTTGCAACTGCTTGGCATGCCATCTTGACGGGGACAATGTTCACTGTGTATTACAAGCCTAGGACTAGTCCCGCTGAATTTATTGTTCCGTATGATCAATATATGGAGTCTCTCAAAAACAGTTATAGCATCGGGATGCGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCAGAGCAGAGGTTTACTGGTACAATTGTTGGAATTGAAGATTCTGATCCCAAGAGGTGGAGAGAATCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACACCCCTCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCACTTGCGCCTCCGGCTCTAAATCCTCTTTCAATGCCCAGGCCTAAAAGGCCTCGGTCTAATGCAGTTCCTTCTTCCCCAGATTCTTCTGTCCTTACTCGAGAAGCATCATCTAAAGTAAGCGTCGACCCTTCACCGGCAAATGGGTTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTGGGTGAAAGCAATGACTCTGATGCTGCTGAGAAATCTGTTGTTTGGCCGCCTGCCGCTTTAGATGATGAAAAGATTGATGCTTCTACGTCAAGGAGGTACGGGACGGAGAGCTGGATGTCAATGGGGAGGAACGAGCCAACATATTCTGATCTTCTTTCAAGTTTTGGGGCCGGTGGGGATCTTTCTCATTCATCCTTGATGGATCAAATCAGCCCGGTAGTTTATCCCACTAGAAAGCAATCGTCAGATCATGAAGGCAAACTTCACATGCCTCAGCCGTGGCCTGTAATGCCCTCTAGTCTTTCATTGAATATATTGGACTCCAATACGAAAGTTCCTGCACATGGTGGTGATCCAACTTACCAAGCACGAGTGAATTTGAGGTACAGTGCATTTGGTGAATACCCTTCACTGCATCATAAAGTAGAACACTCACATGGAAACTTGATGCCACCCCCACCTGCACCCCTACATCAATATCAGACTCCTTGTTCAAGAGAAGTTATGTCAAAACCAGTGTCAACAAAAACATTTGAGGCTCTGAAGTCAAAAAATGGTGACTGTAAGCTATTTGGCTTCTCACTTATCAGTGGCCCTGTTGTACCAGAGCCTTCTGTATCGCAAAGAAATGTCAACGAACCCACTGGTCAGATGCATCTTACGCCACACCAACAAAGAACATCCGAAAATGATGAGAAGTCAGACCACTCAAAGGGCTCAAAAACTGCTGATGATCTAATTGTTGATGACCATGATAGACCATTACAGACTTCTCAGCTACATGTGAAAGATGGTCAAGCTAAACCCCACAGTAGTTCCGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGCATTGCACTCGGTAGGTCAGTGGACCTTGCGAAGTACACTGGCTATGATGAATTAGTGACTGAATTGGATCAGCTGTTTGAATTTGAGGGAGAGTTATTGTCAACTAAAAAGGATTGGCTTATTGTCTATACTGATAACGAGGGTGATATGATGCTTGTAGGCGATGATCCATGGCAGGAATTTTGTGCCATGGTTCGCAAAATTTACATCTACCCTAAGGAGGAGATCCAGAAAATGAGCCCGGGTACCTTGAGCTCAAAAAATGAGGAGAACCTGTCGGGTAGTGAAGGTGCAGATGCAAAAGATGTTAAACGTCTGCCGCTTCAAAAGTTCAATTATGAATATTGCCTTGACGCGTGA 2526 0.4798 MASSEVTMKGNCLNHNDGGAVEAQAPATAKDAEAALFRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQNENDVEKEPPLPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELAAKDLHGNEWRFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNSYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPKRWRESKWRCLKVRWDETSNTPRPERVSPWKIEPALAPPALNPLSMPRPKRPRSNAVPSSPDSSVLTREASSKVSVDPSPANGFPRVLQGQEFSTLRGNLGESNDSDAAEKSVVWPPAALDDEKIDASTSRRYGTESWMSMGRNEPTYSDLLSSFGAGGDLSHSSLMDQISPVVYPTRKQSSDHEGKLHMPQPWPVMPSSLSLNILDSNTKVPAHGGDPTYQARVNLRYSAFGEYPSLHHKVEHSHGNLMPPPPAPLHQYQTPCSREVMSKPVSTKTFEALKSKNGDCKLFGFSLISGPVVPEPSVSQRNVNEPTGQMHLTPHQQRTSENDEKSDHSKGSKTADDLIVDDHDRPLQTSQLHVKDGQAKPHSSSARSCTKVHKKGIALGRSVDLAKYTGYDELVTELDQLFEFEGELLSTKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSKNEENLSGSEGADAKDVKRLPLQKFNYEYCLDA 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium173g00002 841 SUPERFAMILY CAD & PB1 domains 714 790 - -
Vium173g00002 841 Gene3D - 708 802 - -
Vium173g00002 841 Pfam Auxin response factor 268 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium173g00002 841 MobiDBLite consensus disorder prediction 639 662 - -
Vium173g00002 841 MobiDBLite consensus disorder prediction 357 424 - -
Vium173g00002 841 MobiDBLite consensus disorder prediction 663 686 - -
Vium173g00002 841 FunFam Auxin response factor 305 377 - -
Vium173g00002 841 FunFam Auxin response factor 708 802 - -
Vium173g00002 841 SMART B3_2 142 244 IPR003340 GO:0003677
Vium173g00002 841 Pfam AUX/IAA family 703 800 IPR033389 -
Vium173g00002 841 MobiDBLite consensus disorder prediction 802 821 - -
Vium173g00002 841 ProSiteProfiles B3 DNA-binding domain profile. 142 244 IPR003340 GO:0003677
Vium173g00002 841 FunFam Auxin response factor 140 244 - -
Vium173g00002 841 Gene3D - 305 375 - -
Vium173g00002 841 SUPERFAMILY DNA-binding pseudobarrel domain 138 271 IPR015300 -
Vium173g00002 841 MobiDBLite consensus disorder prediction 394 416 - -
Vium173g00002 841 CDD B3_DNA 140 242 IPR003340 GO:0003677
Vium173g00002 841 ProSiteProfiles PB1 domain profile. 713 795 IPR000270 GO:0005515
Vium173g00002 841 MobiDBLite consensus disorder prediction 639 686 - -
Vium173g00002 841 Pfam B3 DNA binding domain 142 243 IPR003340 GO:0003677
Vium173g00002 841 Gene3D - 139 244 IPR015300 -
Vium173g00002 841 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 35 802 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium173g00002 Vium-Chr173 28151 33256 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium173g00002 1 826 B3 DNA Binding Superfamily AT5G62000 64.617 0.0 1078
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium173g00002 B3 3.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium173g00002 - - gmx:100803498 1513.43