Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1739g00006 ATGAACTTCAGGAACTACGGTTATAATAACCCCACTTGGGATGCCATGCATGGGAAGACACCGGCGGCAAATGTTGGTTCTCTACTGAGACAGCCATCATCTGTATACTCCCTTACATTTGATGAGTTTCAGAGCACCATGGGTGGGGTTGGGAAGGAATTTGGGTCCATGAACATGGATGAACTCTTGAAGAACATTTGGACAGCTGAAGAGACTCAGGCCTTGACATTTTCAGCTGGTACAGGAGAAGGCCACAACCTTAACTCAATTAGTGGTGGTTTGCAAAGACAGGGTTCTTTGACATTGCCAAGGACTCTTAGTCAAAAAACAGTAGATGAGGTTTGGAAGGACTTGATCAAAGAAAGTAGTGGGGCCAATGATGGGAATGGCAATGGTGGTTCATCCATTCCTCAAAGGCAACCAACATTGGGAGAAATGACTTTAGAGGAGTTTTTGGTGAGAGCTGGGGTGGTGAGAGAAGATGTGCCTCAACAACAACAAATTGGAAAACCAAATAACAATGGATGGTTTGGTAACTTTCCTAGACCAAACAATAACAATGGCCTACTTCTTGGTTTCCATCAACCAAATAGAAGTAATGGGAATATGGGTGAGAGGGTGGTGGAGACCAACAATAACTTAGCTCCCAAACAACCTCCTCCTCTATCACTAAACTCAAACCACTCTCACCGACCAACACAACAGCCACCACTTTTTCCAAAGCCTGCAAATTTATCTTTTGCTGCTCCTATGCATTTGTTGAACAGTGCTGCACTTGCTAGCCCTGGCAGAAGAGGAGGGTTGATCGACCATTCATTGAATGTTGGACTGGTTGGTTTAGTCTCGGGTAATCCAGAGGCTTCTCCCTCAAGGAAAATATCATCAGATGTAATTACAAGAAGTAATGTAGACAACTCTCCACTGTCGCCAGTTCATTATTCAATCAACAGGGGAAGAAAATCTAGTGCTATAGAGAAAGTGGTTGAGAGAAGACAAAGGAGAATGATCAAAAATAGAGAATCAGCAGCCAGATCACGGGCTCGTAAGCAGGCCTACACTTTCGAACTAGAAGCTGAAGTTGCAAAACTAAAGGAAATAAACAGAGAATTGCAAAGAAAACAGGCAGAAATTAAGGAAATGCAGAAAAACAAGGATTCGGACCCTGCAAGCCAGCCAAGGGTAAGTAAAATACAATGCTTGAGAAGGACACTTACAGGGCCATGGTAG 1227 0.436 MNFRNYGYNNPTWDAMHGKTPAANVGSLLRQPSSVYSLTFDEFQSTMGGVGKEFGSMNMDELLKNIWTAEETQALTFSAGTGEGHNLNSISGGLQRQGSLTLPRTLSQKTVDEVWKDLIKESSGANDGNGNGGSSIPQRQPTLGEMTLEEFLVRAGVVREDVPQQQQIGKPNNNGWFGNFPRPNNNNGLLLGFHQPNRSNGNMGERVVETNNNLAPKQPPPLSLNSNHSHRPTQQPPLFPKPANLSFAAPMHLLNSAALASPGRRGGLIDHSLNVGLVGLVSGNPEASPSRKISSDVITRSNVDNSPLSPVHYSINRGRKSSAIEKVVERRQRRMIKNRESAARSRARKQAYTFELEAEVAKLKEINRELQRKQAEIKEMQKNKDSDPASQPRVSKIQCLRRTLTGPW 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1739g00006 408 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 333 348 IPR004827 GO:0003700|GO:0006355
Vium1739g00006 408 MobiDBLite consensus disorder prediction 124 142 - -
Vium1739g00006 408 MobiDBLite consensus disorder prediction 121 142 - -
Vium1739g00006 408 MobiDBLite consensus disorder prediction 211 236 - -
Vium1739g00006 408 MobiDBLite consensus disorder prediction 211 234 - -
Vium1739g00006 408 Coils Coil 353 383 - -
Vium1739g00006 408 SMART brlzneu 326 390 IPR004827 GO:0003700|GO:0006355
Vium1739g00006 408 MobiDBLite consensus disorder prediction 374 408 - -
Vium1739g00006 408 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 328 385 - -
Vium1739g00006 408 CDD bZIP_plant_BZIP46 330 384 - -
Vium1739g00006 408 SUPERFAMILY Leucine zipper domain 330 378 IPR046347 GO:0003700|GO:0006355
Vium1739g00006 408 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 30 408 IPR043452 GO:0003700|GO:0045893
Vium1739g00006 408 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 328 379 IPR004827 GO:0003700|GO:0006355
Vium1739g00006 408 Gene3D - 328 386 - -
Vium1739g00006 408 Pfam bZIP transcription factor 330 383 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1739g00006 Vium-Chr1739 7257 10713 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1739g00006 16 408 bZIP Transcription Factor Family AT1G49720 47.962 4.53e-99 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium1739g00006 bZIP_1 2.1e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1739g00006 K14432 - gmx:100776600 592.038